Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq137 82.4 5e-11 >seq137 Length=909340 Score = 82.4 bits (90), Expect = 5e-11 Identities = 165/242 (68%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 39480 TATCCAATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTAT 39539 ||| |||||| ||| || || | ||| || || | || | ||| || ||||| || Sbjct 657338 TATGCAATCA--GCCTCCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGAAT 657395 Query 39540 ATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTG 39599 || || || | ||| ||| |||| ||||| || || || |||| || | || || Sbjct 657396 GTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGGCGTTG 657455 Query 39600 CTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC 39659 |||||||| || | ||| || ||||| || ||| || | || ||| | ||| Sbjct 657456 CTGATCCGGTGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTCTCTATCGAGTC 657515 Query 39660 --TGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGC 39717 || ||| |||| |||| || |||||||| || |||| ||| || |||||||||||| Sbjct 657516 ACTGGGCT--CCACCTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGC 657573 Query 39718 AT 39719 || Sbjct 657574 AT 657575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347346201075191