Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq9 116 4e-21 seq137 113 5e-20 >seq9 Length=3474131 Score = 116 bits (128), Expect = 4e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 ||| ||||||||| || || || || ||||| || |||||||| ||| | || || ||| Sbjct 2738255 AAATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGC 2738314 Query 38299 CCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 | | || | | | |||| | |||| |||||||| |||||||||||||| || | Sbjct 2738315 CAAGTGATTCCATTGAGAACG-TAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCA 2738373 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 || ||||| ||||| || | ||| || || ||| |||| |||| ||| || ||| || Sbjct 2738374 GATCAACAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCTGAT 2738433 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || || || |||||||| |||| || ||| | || || Sbjct 2738434 TATAATATTCAAAAGGAGTCGACACTCCATCTTGTTCT 2738471 >seq137 Length=909340 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || ||||| ||||| ||||| ||||||||| | || || ||| | | Sbjct 668240 ATGCAGATATTTGTTAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCGAGT 668181 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || |||| ||||| ||||| || || | ||||| Sbjct 668180 GACTCGATAGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 668122 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | || || || ||| |||| || | ||||| | ||||||||| Sbjct 668121 GCAACGCTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAA 668062 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || ||||| ||||||| || ||||||||||||||| | || ||| Sbjct 668061 CATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 668013 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || || || || |||||| |||| || ||| | | Sbjct 675072 ATGCAGATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 675131 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | || || | | || | || || | ||||||||||| || || | ||||| Sbjct 675132 GATTCGATTGAGAATG-TGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCAGACCA 675190 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || ||||||||| |||| || | ||||| || ||||||||| Sbjct 675191 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAA 675250 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| | ||||| || ||||||||||||||| | || || Sbjct 675251 CATTCAGAAGGAGTCAACGCTTCACTTGGTGCTGCGTTTGCGTGGTGG 675298 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || || |||||| |||| || ||| | | Sbjct 667328 ATGCAGATCTTCGTGAAGACGCTGACTGGGAAGACTATCACCCTCGAGGTTGAGCCGAGT 667269 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | || |||| | || | ||| || | ||||| ||||| |||||| | ||||| Sbjct 667268 GATTCGATTGAGAACG-TGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCCCCAGACCA 667210 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| ||||| ||| |||| || | ||||| | ||||||||| Sbjct 667209 ACAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAA 667150 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || |||||| |||| || || | ||||| ||| Sbjct 667149 CATTCAGAAGGAATCGACCCTTCACCTTGTGCTTCGT 667113 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || |||||||| || || || || || || | || || ||| | | Sbjct 675300 ATGCAAATATTTGTGAAAACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 675359 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || |||| ||||| ||||| || || | ||||| Sbjct 675360 GACTCGATAGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCAGACCA 675418 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || ||| | || | || || || ||| |||| || | ||||| | ||||||||| Sbjct 675419 GCAACGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAA 675478 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| ||||||| || ||||||||||||||| | || || Sbjct 675479 CATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGG 675526 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || ||||| || || || || |||||| |||| || ||| | | Sbjct 667784 ATGCAAATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 667725 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | || || | | || | || || | ||||||||||| || || | ||||| Sbjct 667724 GATTCGATTGAGAATG-TGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCAGACCA 667666 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || ||||||||| |||| || | ||||| || ||||||||| Sbjct 667665 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAA 667606 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || ||||| | ||||| || ||||||| ||| || | || ||| Sbjct 667605 CATTCAGAAGGAGTCAACGCTTCACCTGGTGCTTCGTCTGCGTGGTGGC 667557 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || |||||||| || || || || || || | || || ||| | | Sbjct 667556 ATGCAAATATTTGTGAAAACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 667497 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || |||| ||||| ||||| || || | ||||| Sbjct 667496 GACTCGATAGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 667438 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || ||| | || | || || || ||| |||| || | ||||| | ||||||||| Sbjct 667437 GCAACGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAA 667378 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| | ||||| || ||||||||||||||| | || || Sbjct 667377 CATTCAGAAGGAGTCAACGCTTCACTTGGTGCTGCGTTTGCGTGGTGG 667330 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || || |||||| |||| || ||| | | Sbjct 675528 ATGCAGATCTTCGTGAAGACGCTGACTGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 675587 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | || | ||| |||| ||||| ||||| ||||| | |||||| Sbjct 675588 GACTCGATAGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAA 675647 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || ||||| ||| |||| || | ||||| | |||||||||| Sbjct 675648 CAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAAC 675707 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || |||||| |||| || || | ||||| ||| | | ||||| Sbjct 675708 ATTCAGAAGGAATCGACCCTTCACCTTGTGCTTCGTCTTCGTGGCGG 675754 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || |||||||| ||||| | || || ||| ||| Sbjct 658031 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAAACAATCACACTGGAGGTGGAGCCCAGT 657972 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | || | || || | ||||| ||||| ||||| | ||||| Sbjct 657971 GACTCGATAGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCACCGGACCAG 657912 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | || || || ||| |||| || | |||||| | ||||||||| Sbjct 657911 CAACGCCTGATCTTTGCAGGAAAGCAGTTGGAAGATGGTCGCACCTTGTCTGACTACAAC 657852 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || ||| | || || ||| | |||| || Sbjct 657851 ATCCAAAAGGAATCCACCCTTCATCTTGTACTCCGTCTTCGAGGTGG 657805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500138244311680