Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq8 129 7e-25 seq5 91.5 2e-13 >seq8 Length=2505178 Score = 129 bits (142), Expect = 7e-25 Identities = 356/541 (66%), Gaps = 21/541 (4%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||||||||||| ||||| ||| | || ||||| ||||| |||||| | || ||| | Sbjct 602384 CCTCAGTACATGTTTATGCGCGTCTCAATAGGTATTCATGGTGAAGATGTGGACGCTGCT 602443 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTA---TGTTCATCCACGCAACACCAACCCTC 111728 | ||||| ||| | ||||| || | ||| || ||||| |||| || || Sbjct 602444 ATTGAGACCTACAATCTAATGTC---TGAAAAGTGGTTGATTCACGCCTCACCCACTCTT 602500 Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 || || ||||| || || || || |||||||| ||||| | || ||| || || Sbjct 602501 TTTAATGCTGGGACGCCTTACCCTCAGATGTCCAGCTGTTTTTTGCTTACAATGAAAGAC 602560 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 || ||| | || || || | ||| |||| ||||||| | ||||| || | || Sbjct 602561 GACAGTATCGAGGGTATATATGACACGCTCAAACAATGTGCACTGATCTCGAAAAGCGCG 602620 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908 ||||| ||||| | | | || || || ||| || | ||| || || Sbjct 602621 GGTGGGATCGGTCTCAATGTTCACTGCATCCGAAGCAAGAATACGTTTATCGCTGGAACT 602680 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 ||||| | || ||||| || | || |||||||| || || ||| ||| || || ||| Sbjct 602681 AATGGGGAGTCCAATGGTCTTGTACCGATGCTTCGGGTCTTCAACAGCACCGCTCGTTAT 602740 Query 111969 GTAAACCAAGCTGGGCGTC-GCAA------GGGATCTATCGCAGTCTATCTTGAGCCATG 112021 || | | | ||||| | ||| || | | || ||||||| || ||||| Sbjct 602741 GT----CGATCAGGGCGGCAACAAACGACCCGGTGCCTTTGCCATCTATCTCGAACCATG 602796 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGG--AGGCG 112079 ||| ||||| | || |||| | ||||| || ||| || | ||| | | || Sbjct 602797 GCATCCGGATGTACTGCAGTTTGTGGAGTTACGGAAGAACACTGGCGCTGAAGAAATTCG 602856 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || | || ||||||||| ||| || |||||||| ||||| ||||||||| |||||||| Sbjct 602857 CGCT--CGGGATCTCTTCCTCGCACTTTGGATTCCCGATCTATTCATGAAGCGAGTTGAG 602914 Query 112140 G 112140 | Sbjct 602915 G 602915 >seq5 Length=4770536 Score = 91.5 bits (100), Expect = 2e-13 Identities = 170/246 (69%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 || ||| | ||||| ||||| | || ||| || ||||| || |||||||| | | | Sbjct 3307145 CTGTTTAACGCCATTCAAACGTTGCCGTGTGTTGCTAAGAAGGCCGATTGGGCGCTTAGG 3307204 Query 102150 TGGTTTG---ATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 102206 ||| ||| ||| |||| | | | | || ||||| || | || || || | | Sbjct 3307205 TGGATTGCGAATAAAAAGGCACCGTAC---GCGGAGCGTCTGGTGGCGTTCGCTGCTATC 3307261 Query 102207 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCT 102265 || || | ||||| |||||||| || ||| | || | |||||||||||||| ||||| Sbjct 3307262 GAAGGCGTATTCTTTTCTGGTTCATT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCT 3307320 Query 102266 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGA 102325 |||||| || ||| ||| |||||||| ||| ||| || || || |||||| || Sbjct 3307321 CATGCCTGGCCTCACCTTTAGTAACGAGCTGATCAGTCGAGATGAAGGCCTCCACACGGA 3307380 Query 102326 GTTTGC 102331 ||||| Sbjct 3307381 TTTTGC 3307386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620699514459440