Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq8 132 6e-26 seq5 113 5e-20 >seq8 Length=2505178 Score = 132 bits (146), Expect = 6e-26 Identities = 382/586 (65%), Gaps = 5/586 (1%) Strand=Plus/Minus Query 110606 CCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAAC 110665 ||||||| | ||||||||| || || |||||||| | || ||| || || || | Sbjct 602915 CCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGC 602856 Query 110666 GAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCC 110725 || |||||| | || ||| |||| ||||| ||| | || | ||||| |||| Sbjct 602855 GAATTTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCC 602796 Query 110726 ATGGTTCGAGATAGACAGCGATGGATCC----CTTACGACGACCCGCCTGGTTAACATAG 110781 ||||||||||||||| || | || || | | | | | | |||| | ||||| Sbjct 602795 ATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCGC-CCTGATCGACATAA 602737 Query 110782 CGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTA 110841 || || ||| |||||||||| ||||| || | || |||| ||| | ||||| || Sbjct 602736 CGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTT 602677 Query 110842 CCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCC 110901 || || | || ||| || ||| ||| | || | ||| || |||||||| Sbjct 602676 CCAGCGATAAACGTATTCTTGCTTCGGATGCAGTGAACATTGAGACCGATCCCACCCGCG 602617 Query 110902 CACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCC 110961 | || || ||||||| | | |||| || |||| ||||| || || || | Sbjct 602616 CTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCT 602557 Query 110962 TTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGT 111021 || | | || | ||| || ||||||||||| |||||| || ||||| || || Sbjct 602556 TTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGA 602497 Query 111022 GTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAG 111081 || |||| || ||||| ||| || ||||| ||||| || || | || | | Sbjct 602496 GTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCG 602437 Query 111082 GGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCG 111141 ||||||| ||| |||||||| || | || ||||| ||||| || |||||| | || Sbjct 602436 TCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTCC 602377 Query 111142 ATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCT 111187 | || ||||| ||| |||| || |||||||| |||| Sbjct 602376 CAAATTTTCCCATCCCTACGGAGAAGATACGACTTCTCTAACGTCT 602331 Score = 93.3 bits (102), Expect = 5e-14 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 109407 GCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGA 109466 ||| ||||||||||| ||||||||||| ||| |||||| ||||| | |||||| | Sbjct 604333 GCGCAGATAATACATCCCCGTTTTGAGTCCACGCTTCCAGGCGTAGAAATGCATACTCGT 604274 Query 109467 GAGTTTGGAAAGT-GTCGGACT-CTCCATAAACAAGTTCATCGACTGAGACTGATCGATG 109524 || ||| | || || || || || ||| ||| ||| | ||||| ||| || ||| Sbjct 604273 GATTTT--ACCGTAGTTGGGCTCCTTCATGTACAGGTTAAGAGACTGGCTCTGGTCAATG 604216 Query 109525 AATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTC 109584 || || |||||||||| |||| |||| || || ||| || ||||| || || Sbjct 604215 AACGGAGCACGATCAGCTGCCAAATCGAGTATTTTTTTCTGGGGTATCTCCCAAACTGTT 604156 Query 109585 TTGTACAAATTCTTGATATCATCGGGAAT 109613 ||||| | | |||||| || || ||||| Sbjct 604155 TTGTAGAGAGCCTTGATGTCTTCTGGAAT 604127 >seq5 Length=4770536 Score = 113 bits (124), Expect = 5e-20 Identities = 364/558 (65%), Gaps = 24/558 (4%) Strand=Plus/Minus Query 119498 AAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGG 119557 |||| | || || || |||||||| ||| ||| ||||| ||||| ||| || ||||| Sbjct 3307383 AAATCCGTG-TGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCCAGG 3307325 Query 119558 CATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCC 119617 |||||| || | ||||| ||||| ||||||| | ||| ||||||||||| | ||| Sbjct 3307324 CATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAATACGCC 3307265 Query 119618 CTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGT------CGAA 119671 || | | ||||| || | |||||||| || | ||| | ||| | | | Sbjct 3307264 TTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGT---GCCTTTTTATTCGCAAT 3307208 Query 119672 CCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTT---- 119727 |||| | || ||||| | |||||| | | || || | ||||| ||||| | Sbjct 3307207 CCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAA 3307148 Query 119728 CGAAAAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGG 119787 | ||||| || | | || | |||||| | || ||||||| || |||||| Sbjct 3307147 CAGAAAGTCGCGTTCTATCGG----ATCCTTGACGTAGGTATCAATCAGAAGAGAGTACA 3307092 Query 119788 TCTCACCATGAACCATTTCATTGTGTGAC-TGATAGGCATAAAATGAGCGAGCTTCGGAA 119846 ||||| ||||| |||| | ||| || ||||||| | ||||| |||| | Sbjct 3307091 TCTCAGAATGAATGTTTTC-CACAGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGA 3307033 Query 119847 ATTTGCACTTCGTCAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCA 119906 ||||| || |||| | |||||| | | ||||||| ||| || ||||| | Sbjct 3307032 ATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCC 3306973 Query 119907 GCGAAGAATGCTAAGATGTACTTTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAG 119966 |||||||| || |||| ||| ||||| | | || ||| || || ||| |||| Sbjct 3306972 GCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGACTTTCCCAG 3306913 Query 119967 TCGTCCATATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAGTTAGA--CATCTGTGCCT 120024 || | ||| || | || || || || ||| |||||||| ||| || | || | Sbjct 3306912 TCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAAC--CGCTT 3306855 Query 120025 TTTTATAGAGTTCCCAAA 120042 | || |||| ||||||| Sbjct 3306854 TCTTGTAGAACTCCCAAA 3306837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588935309120600