Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq9 167 5e-36 seq137 145 2e-29 seq383 120 7e-22 >seq9 Length=3474131 Score = 167 bits (184), Expect = 5e-36 Identities = 171/222 (77%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | |||||| || || || ||||| ||||||||||| ||||| | ||||| | | Sbjct 2738477 AGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAATCAGAGAGAGTCCGC 2738418 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || || | ||||||||| ||||||||||| |||||||| ||||| || || || ||| Sbjct 2738417 CCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCT 2738358 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGG 195099 |||||||| |||||| || ||||||||||||| || |||| || || |||||| Sbjct 2738357 TTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATC---ACTTGGCTCAACCTCAAGG 2738301 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || ||||| || | ||| || || || | ||||||| Sbjct 2738300 GTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 2738259 >seq137 Length=909340 Score = 145 bits (160), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || || || || ||||| ||||| |||| | || | |||||||| Sbjct 667120 ACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCTTCC 667179 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || |||||||| | ||||||||||||||| |||||||| || ||||||||| Sbjct 667180 AACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGA 667239 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || ||| ||| ||||||||||| | || ||| || || || ||||| | ||| Sbjct 667240 ATCTTTGCCTTCACGTTCTCAATCGAATC---ACTCGGCTCAACCTCGAGGGTGATAGTC 667296 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 667297 TTCCCAGTCAGCGTCTTCACGAAGATCTGCAT 667328 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||||| |||||||| || || || | || || | |||||||| Sbjct 668944 ACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCC 669003 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || ||||| || ||||| ||||| || |||||||| || ||||||||| Sbjct 669004 AACTGCTTCCCCGCAAAGATTAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGA 669063 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || ||||| || ||||| |||||| || || |||| ||||| Sbjct 669064 ATCTTCGCCTTCACATTCTCGATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTG 669123 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||| || || | |||||| Sbjct 669124 CCGGTTAGAGTTTTCACAAAAATTTGCAT 669152 Score = 136 bits (150), Expect = 9e-27 Identities = 161/214 (75%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAGTTCTCCCATCTTC 194990 ||||||||||| |||||||| |||||||| ||||| || | |||| || | |||||||| Sbjct 657367 ACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAG-GTGCGACCATCTTC 657425 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||| ||||| ||||| || ||||| || || || |||||||| || |||||||| Sbjct 657426 CAACTGCTTTCCTGCAAAGATCAGGCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTG 657485 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 ||| ||| ||| || ||||| || | ||| ||| ||||| || || || | || Sbjct 657486 AATCTTTGCCTTCACATTCTCTATCGAGTC---ACTGGGCTCCACCTCCAGTGTGATTGT 657542 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || | ||| || ||||| | |||||| Sbjct 657543 TTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 657576 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || ||||| |||||||| |||||||| | |||||| | |||||||| Sbjct 668488 ACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 668547 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||||| || ||||| | || || |||||||| ||||||||||| || ||||| Sbjct 668548 AATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGG 668607 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||||||||| | || ||| ||||| || || | ||||| Sbjct 668608 ATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTG 668667 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || || || | ||||| Sbjct 668668 CCGGTTAGAGTCTTGACAAAAATCTGCAT 668696 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || ||||| |||||||| |||||||| | |||||| | |||||||| Sbjct 668716 ACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 668775 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||||| || ||||| | || || |||||||| ||||||||||| || ||||| Sbjct 668776 AATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGG 668835 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||||||||| | || ||| ||||| || || | ||||| Sbjct 668836 ATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTG 668895 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || || || | ||||| Sbjct 668896 CCGGTTAGAGTCTTGACAAAAATCTGCAT 668924 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || || || || ||||| ||||| |||| | || | |||||||| Sbjct 675736 ACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCTTCC 675677 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || ||||| | |||||||||||||||||||||||| || ||||| || Sbjct 675676 AACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGG 675617 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||| || ||||| || | ||| | || || || ||||| | ||||| Sbjct 675616 ATCTTTGCCTTCACATTCTCTATCGAGTCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 675557 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 675556 CCAGTCAGCGTCTTCACGAAGATCTGCAT 675528 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || ||||| || ||||| |||||||| | |||||| | || ||||| Sbjct 668260 ACGAGATGAAGCGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCC 668319 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||||||| ||||| || | || ||||| ||||| |||||||| || || ||||| Sbjct 668320 AACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCCCTCCTTATCTTGG 668379 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||||||||| | || ||| ||| ||||| || || | ||| Sbjct 668380 ATCTTCGCCTTTACGTTCTCAATCGAATC---ACTGGGTTCAACTTCTAGCGTTATAGTC 668436 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||| || || || | ||||| Sbjct 668437 TTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 668468 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| || ||||| ||||| |||| |||||| | |||||||| Sbjct 667576 ACCAGGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCATCTTCC 667635 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| || || || ||||| | || || |||||||| || || || |||||||||||| Sbjct 667636 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGA 667695 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| | || | || || || ||||| | ||||| Sbjct 667696 ATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 667755 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | |||||| Sbjct 667756 CCGGTAAGCGTCTTCACAAAGATTTGCAT 667784 Score = 111 bits (122), Expect = 3e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| || ||||| ||||| |||| |||||| | |||||||| | ||| Sbjct 675275 GTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAACTG 675216 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| | || || |||||||| || || || |||||||||||||| || Sbjct 675215 TTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGAATCTT 675156 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || |||||||| | || | || || || ||||| | ||||| || || Sbjct 675155 GGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGT 675096 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 675095 AAGCGTCTTCACAAAGATCTGCAT 675072 >seq383 Length=735259 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| || |||||||||||||| | | | | ||||| || Sbjct 365919 ACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCC 365860 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| || || || ||||| || ||||||||||| ||||| || || ||||||||| Sbjct 365859 AATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGA 365800 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| | || || || || ||||| || | || || Sbjct 365799 ATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTG 365740 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||| || || | ||||| Sbjct 365739 CCGGTAAGAGTTTTCACAAAAATCTGCAT 365711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109403032407209