Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq137 129 4e-25 seq9 102 5e-17 seq383 86.0 4e-12 >seq137 Length=909340 Score = 129 bits (142), Expect = 4e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | ||| | || |||||||||| || || ||||||||||| ||||| ||| Sbjct 675298 CCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAA 675239 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||| |||||| || ||||| || | || ||||||||| | || Sbjct 675238 AGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGG 675179 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||| ||||| |||||| || || || || ||||| |||| | ||||| Sbjct 675178 ATACCCTCTTTGTCTTGAATCTTGGCCTTCAC--ATTCTCAATCGAATCACTAGGCTCAA 675121 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| || || || || || || |||||||||||||||||||| Sbjct 675120 CCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATCTGCAT 675072 Score = 120 bits (132), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||||||||| ||||| ||||| | || |||| ||| Sbjct 667576 ACCAGGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCATCTTCC 667635 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | |||||| || ||||| || | || ||||||||| | || | ||||| ||||| | Sbjct 667636 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGA 667695 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || ||||| |||| | |||||| |||| ||| || || | Sbjct 667696 ATCTTGGCCTTCAC--ATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCT 667753 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || || |||||||||||||| |||||| Sbjct 667754 TCCCGGTAAGCGTCTTCACAAAGATTTGCATA 667785 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | ||| | || |||||||||| || || ||||||||||| ||||| || Sbjct 668014 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 668073 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | || |||| |||| ||| ||||| ||||| || | ||||||||||| | || Sbjct 668074 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCCGGTGGG 668133 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| |||||| || ||| ||||||| |||| | ||| || Sbjct 668134 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 668193 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || ||||| || || ||||| ||||||||| Sbjct 668194 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCATA 668241 Score = 116 bits (128), Expect = 2e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || || |||||||| ||||| || | | | || |||| |||| ||| Sbjct 657372 GTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTG 657431 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||||| ||||| || || |||||||| || | || | ||||||||||| |||||| Sbjct 657432 CTTTCCTGCAAAGATCAGGCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGAATCTT 657491 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 || || ||||||| |||| || ||| || || | || || ||||| || || Sbjct 657492 TGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGT 657551 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 ||||||||||| ||||||||||| Sbjct 657552 TAGAGTCTTCACGAAGATCTGCAT 657575 Score = 114 bits (126), Expect = 8e-21 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 |||| |||| ||| ||| || || ||||| ||||| || | | | || |||| |||| Sbjct 657824 CAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTCCA 657883 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 ||| ||||| ||||| || || ||||||||||| | || | ||||||||||| || Sbjct 657884 ACTGCTTTCCTGCAAAGATCAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGAA 657943 Query 34894 TCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 ||||| || || ||||||| |||| || ||| || || | || || ||||| | Sbjct 657944 TCTTCGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGC 658003 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||||||||| ||||| ||||| Sbjct 658004 CAGTCAAAGTCTTCACGAAGATTTGCAT 658031 Score = 114 bits (126), Expect = 8e-21 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| || | | || |||| |||| ||| || || || || Sbjct 667137 TTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCTTCCAACTGCTTGCCAGCGAA 667196 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | |||||| |||||| | || | ||||||||||| |||||| || ||| Sbjct 667197 GATCAATCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTCACGTT 667256 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | ||||| |||| | |||||| |||| ||| || || || || || || |||||||| Sbjct 667257 CTCAATCGAATCACTCGGCTCAACCTCGAGGGTGATAGTCTTCCCAGTCAGCGTCTTCAC 667316 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 667317 GAAGATCTGCATA 667329 Score = 114 bits (126), Expect = 8e-21 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| || | | || |||| |||| ||| || || ||||| Sbjct 675719 TTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCTTCCAACTGCTTGCCAGCAAA 675660 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | |||||| |||||| | || | ||||||||||| ||||| || || Sbjct 675659 GATCAATCGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATT 675600 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||||| |||| | |||||| |||| ||| || || || || || || |||||||| Sbjct 675599 CTCTATCGAGTCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCAGTCAGCGTCTTCAC 675540 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 675539 GAAGATCTGCATA 675527 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | ||| | || |||||||||| || || ||||||||||| ||||| || Sbjct 675526 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 675467 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | || |||| |||| ||| ||||| ||||| || | |||||||||||| | || Sbjct 675466 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGG 675407 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| |||||| || ||| ||||||| |||| | ||| || Sbjct 675406 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 675347 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || || || || || || || || |||||||| || |||||| Sbjct 675346 TCCAACGTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCATA 675299 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | ||| | || |||||||||| || || ||||||||||| ||||| || Sbjct 667330 CCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAC 667389 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | || |||| |||| ||| ||||| ||||| || | ||||||||||| | || Sbjct 667390 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCCGGTGGG 667449 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| |||||| || ||| ||||||| |||| | ||| || Sbjct 667450 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 667509 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || || || || || || || || |||||||| || ||||| Sbjct 667510 TCCAACGTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 667556 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||||||||| || ||| | || |||| |||| ||| || || ||||| Sbjct 668962 TCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAAG 669021 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||| ||||||||||| | || | ||||||||||| ||||||| || || || Sbjct 669022 ATTAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCAC--AT 669079 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | || || || || | || || || || || || ||||| |||| Sbjct 669080 TCTCGATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTTTTCA 669139 Query 34969 CAAAGATCTGCAT 34981 |||| || ||||| Sbjct 669140 CAAAAATTTGCAT 669152 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || || ||||| | || | || |||| ||| || || || || Sbjct 668278 TCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAA 668337 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || || ||| |||| | |||||||| || |||||| || ||| Sbjct 668338 ATCAAACGCTGTTGATCTGGCGGAATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTC 668397 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| |||| || ||||| || | ||||| || || || || |||||||| ||| Sbjct 668398 TCAATCGAATCACTGGGTTCAACTTCTAGCGTTATAGTCTTGCCGGTTAGAGTCTTGACA 668457 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 668458 AAGATCTGCAT 668468 >seq9 Length=3474131 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || ||||| ||||| || || || | || | || |||| ||| || ||||| || Sbjct 2738450 TCCTTTTGAATATTATAATCAGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAG 2738391 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| || ||| | || | ||||| ||||| || || ||| ||| Sbjct 2738390 ATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTC 2738331 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || || |||| | |||||| || | ||||||||||||||| ||||||||||| ||| Sbjct 2738330 TCAATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACA 2738271 Query 34971 AAGATCTGCAT 34981 || || ||||| Sbjct 2738270 AAAATTTGCAT 2738260 >seq383 Length=735259 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||| || || || || | | ||| |||| |||| || || || ||||| Sbjct 365901 TCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAA 365842 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || |||||| | || | |||||||||||| |||||| || || || Sbjct 365841 ATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTAGCCTTCAC--AT 365784 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || || || || ||| || || | || || ||||| || || ||||| |||| Sbjct 365783 TCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCA 365724 Query 34969 CAAAGATCTGCAT 34981 |||| |||||||| Sbjct 365723 CAAAAATCTGCAT 365711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324611732579256