Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 239 5e-58 seq8 168 8e-37 >seq5 Length=4770536 Score = 239 bits (264), Expect = 5e-58 Identities = 494/727 (68%), Gaps = 20/727 (3%) Strand=Plus/Minus Query 18831 ACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATT 18890 ||||||||| || || | | ||||| || || || ||||||||||| ||| ||| | Sbjct 3307519 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCCGTAAGAAATTCGCATTCAATACT 3307460 Query 18891 TACTGCCTC-----TGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGA 18945 |||||||| |||| | ||| ||| || || | |||| || | || | Sbjct 3307459 GACTGCCTCCCTCATGATGTCATA-----AACCCTTTCCGCCGTAGGCTTGTTCACAATA 3307405 Query 18946 TGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCA 19005 |||||||| || | ||||||||||| || || || || |||| ||| |||| || Sbjct 3307404 TGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCG 3307345 Query 19006 TTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAAT 19065 ||| ||| || | |||||||| || || | || || | |||||| || ||||||||| Sbjct 3307344 TTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAT 3307285 Query 19066 GATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA 19125 || ||||||||||||| ||||| | || || || || || || | || | || Sbjct 3307284 GAACCAGAAAAGAATACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGT 3307225 Query 19126 GCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATT 19185 || | ||||| |||||| | || |||||||| |||||||| ||||| |||| Sbjct 3307224 GCCTTTTTATTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAAC 3307165 Query 19186 GTCTCTATAGAATTAAATAGATACATACGCTC-ATCTGTATCTTTAACATATGCATCTAT 19244 || | || | ||||| ||| | || || ||| | ||| || || || | ||| || Sbjct 3307164 GTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTATC-GGATCCTTGACGTAGGTATCAAT 3307106 Query 19245 CAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACA 19304 || | | |||||| || |||||||| ||||| | ||| | || | ||| |||||||| Sbjct 3307105 CAGAAGAGAGTACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAACA 3307046 Query 19305 TCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGA--CCAAATTTTCATTAACT 19362 | || || | || || || || ||||||| ||| | | |||||||||||| Sbjct 3307045 ACGAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACG 3306988 Query 19363 ATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATC-TGA 19421 || |||||||| || || || || || || |||| ||| || || || | | | Sbjct 3306987 ATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCA 3306928 Query 19422 GGTTAA-TGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAA 19480 |||| | | ||| ||| | | ||| || | |||||| ||||| ||||||||||| | Sbjct 3306927 --TTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGA 3306870 Query 19481 AAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAA 19540 |||| || | ||||| || || | | ||| |||||| | ||||| || || | | || Sbjct 3306869 AAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAA 3306810 Query 19541 CAAATCT 19547 | ||||| Sbjct 3306809 CGAATCT 3306803 >seq8 Length=2505178 Score = 168 bits (186), Expect = 8e-37 Identities = 363/538 (67%), Gaps = 6/538 (1%) Strand=Plus/Minus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 |||| |||| ||| || |||||||| || | || | ||||| || | | ||||||| Sbjct 602903 TCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATTTCTTCAG 602844 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 |||| | ||| | | || | ||| | || || ||| | |||||||||||| | || Sbjct 602843 CGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGTTCGAGAT 602784 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | || || | |||| |||||||| || || || ||||| | ||| | || || ||| Sbjct 602783 AGATGGCAAAGGCACCGGGTCGTTTGTTGCCGCCCTGATCGACATAACGAGCGGTGCTGT 602724 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 | | || | | ||| || |||| |||||| || ||||| ||||| | ||| ||| Sbjct 602723 TGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCAGCGATA-AAC 602665 Query 48451 TTCCACTAGC-TCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATA 48507 | || || || || | | |||| | ||| || ||||| || |||| || | Sbjct 602664 GTATTCTTGCTTCGGATGCAGTGAACATTG--AGACCGATCCCACCCGCGCTTTTCGAGA 602607 Query 48508 TTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTA 48567 | || ||||| |||| || || ||||| || || || ||||| || ||| |||| | | Sbjct 602606 TCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCTTTCATTGTAA 602547 Query 48568 ATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATG 48627 | |||||| || ||||| || || | | || || | |||||| | || || || | Sbjct 602546 GCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTGGGTGAGG 602487 Query 48628 CATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCC 48687 | ||||| ||||| || || || | | || || || |||||| ||| || | ||| Sbjct 602486 CGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGTCCACATCTT 602427 Query 48688 ATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTT 48745 ||| |||||||| || || ||||| ||||| || ||||| || || |||||| Sbjct 602426 CACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTCCCAAATTTT 602369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562069965308280