Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq5 170 2e-37 >seq5 Length=4770536 Score = 170 bits (188), Expect = 2e-37 Identities = 363/540 (67%), Gaps = 4/540 (1%) Strand=Plus/Minus Query 37160 ATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTC 37219 || |||||| | | ||||||||||| || | |||||||||| ||| |||| || Sbjct 3307405 ATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTC 3307346 Query 37220 ATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAA 37279 ||| |||||| | || ||||| | ||| | || || | ||| || || | ||||| Sbjct 3307345 GTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAA 3307286 Query 37280 AGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGT 37339 || ||||||||||| | ||||| | || || || || || ||||| || | | Sbjct 3307285 TGAACCAGAAAAGAATACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGG 3307226 Query 37340 TGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAAT 37399 || | | || | |||||| | | |||||| ||||| |||||| | Sbjct 3307225 TGCCTTTTTATTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAA 3307166 Query 37400 TGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAAT 37459 |||| ||| || || || ||||||| |||| ||| | | || |||||||| Sbjct 3307165 CGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTATCGGATCCTTGACGTAGGTATCAAT 3307106 Query 37460 TAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACA 37519 || | | ||||| ||||| ||||| ||||| | ||| | || | ||||||||||| Sbjct 3307105 CAGAAGAGAGTACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAACA 3307046 Query 37520 CCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTAT 37579 | ||| || | | ||| || |||||| |||| || || || ||||||||||| || Sbjct 3307045 ACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGAT 3306986 Query 37580 CCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT--TT 37637 |||||||| || || |||||||| | ||||| || || || | || ||| || Sbjct 3306985 GCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATT 3306926 Query 37638 GATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAA 37697 | | ||| ||| ||| | | ||| || | |||||||||||| ||||| ||||| ||| Sbjct 3306925 AAGA--CTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAA 3306868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592275878313080