Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq137 141 7e-29 seq383 138 9e-28 >seq137 Length=909340 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 |||| || | |||||| || || || ||||| || |||||||| | | ||| | | || Sbjct 668482 CGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCA 668541 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||||||||||||| ||||| ||||||||||| || || || ||||||||||| ||| Sbjct 668542 TCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTA 668601 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||| || || ||||| | || | | || | ||| ||||| || || | Sbjct 668602 TCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATG 668661 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || |||||||||| ||| || ||||| ||||||||| Sbjct 668662 GTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCATG 668697 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 |||| || | |||||| || || || ||||| || |||||||| | | ||| | | || Sbjct 668710 CGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCA 668769 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||||||||||||| ||||| ||||||||||| || || || ||||||||||| ||| Sbjct 668770 TCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTA 668829 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||| || || ||||| | || | | || | ||| ||||| || || | Sbjct 668830 TCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATG 668889 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || |||||||||| ||| || ||||| ||||||||| Sbjct 668890 GTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCATG 668925 Score = 131 bits (144), Expect = 1e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || || || || || || |||||||| | | ||| | | || ||||| || Sbjct 668265 ATGAAGCGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCCAACTG 668324 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || || ||||||||||||||||| ||||||||||| || |||||||| || || Sbjct 668325 CTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCCCTCCTTATCTTGGATCTT 668384 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||||| | || | | ||| | ||| ||||| || || | || |||||||| Sbjct 668385 CGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATAGTCTTGCCGGT 668444 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 || ||| || ||||| ||||||||| Sbjct 668445 TAGAGTCTTGACAAAGATCTGCATG 668469 Score = 129 bits (142), Expect = 5e-25 Identities = 188/264 (71%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 101210 CAATATCATTTTTATTTAATATACTAGA--CATTT--CCTCCTCTTAAACGTAAAACTAA 101265 ||||||||||| | || |||| | | | || | ||||| | | ||| | || | Sbjct 657312 CAATATCATTTATTTTAAATAAATTGTATGCAATCAGCCTCCACGAAGACGAAGCACAAG 657371 Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||||| || || ||||| || ||||| || | | || | |||| ||||| || Sbjct 657372 GTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTG 657431 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| |||||||| |||| || || ||||| || |||||||| || || |||||||| || Sbjct 657432 CTTTCCTGCAAAGATCAGGCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGAATCTT 657491 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || ||| | |||| | |||| | ||||| || || |||| ||||||||||| Sbjct 657492 TGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGT 657551 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 || ||| || || || |||||||| Sbjct 657552 TAGAGTCTTCACGAAGATCTGCAT 657575 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| ||||| || || || ||||| || | | ||| | |||| ||||| || Sbjct 667809 ATGGAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAAAGTGCGACCATCCTCCAACTG 667868 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| ||||||||||| ||||| |||||||| || || ||||| ||||| || Sbjct 667869 CTTGCCAGCAAAGATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCCTGAATCTT 667928 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | ||||| | ||||||||| || || | || || || || Sbjct 667929 GGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGTCTTCCCAGT 667988 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || ||||| |||||| Sbjct 667989 CAGCGTCTTCACGAATATTTGCATG 668013 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| | || || ||||| || || || || || || ||||| |||| | || | Sbjct 668023 AAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGA 668082 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| ||||| ||||| |||||||| ||||| || || || || || || ||||| || Sbjct 668083 CCATCCTCCAACTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCCGGTGGGATGCCCTCC 668142 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 || || || || || || || | |||| | |||| || ||||| || | ||| Sbjct 668143 TTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAAGGTG 668202 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || |||||||| | ||||| |||||||||||||| Sbjct 668203 ATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 668240 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| | || || ||||| || || || || || || ||||| |||| | ||| | Sbjct 675289 AAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGA 675230 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| ||||| || || || ||||| ||||||||||| || || || || || || ||| Sbjct 675229 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCCTCT 675170 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 || |||||||| || || ||| | || | | ||| | || || || || ||| Sbjct 675169 TTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTG 675110 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | || || ||||| | || || ||||| ||||||||| Sbjct 675109 ATAGTCTTCCCGGTAAGCGTCTTCACAAAGATCTGCATG 675071 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || || || || || ||||| |||| | ||| | |||| ||||| || Sbjct 667582 TGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAACTGT 667641 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||||||||| || || || || || || ||||| |||||||| || Sbjct 667642 TTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGAATCTTG 667701 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | | ||| | || || || || |||| || || ||||| Sbjct 667702 GCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTA 667761 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| || ||||| Sbjct 667762 AGCGTCTTCACAAAGATTTGCAT 667784 >seq383 Length=735259 Score = 138 bits (152), Expect = 9e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || || || || ||||||||||| | | | | |||| ||||||||| Sbjct 365913 TGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGC 365854 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | ||||||||| || || ||||| || || || |||||||| || Sbjct 365853 TTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTA 365794 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || || || | || || |||||||||| ||||||||||| Sbjct 365793 GCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTA 365734 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 | |||||| ||||| ||||||||| ||| ||||| Sbjct 365733 AGAGTTTTCACAAAAATCTGCATGCCGACGTGAAGA 365698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396251706563139