Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq24 100 4e-16 seq21 100 4e-16 >seq24 Length=1090457 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 47938 GCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAA 47997 ||||| || || || || || ||||||||||| || | | |||| ||| ||||||||| Sbjct 7331 GCTCTGGTGATTTTTCGGGTCACAAAAGTTTCGCCCCTGCGTGGACTTTCGTGATTAAAA 7272 Query 47998 AGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTAC 48057 ||||||||| | || ||| | || | || |||||||| ||||| || |||||||| Sbjct 7271 AGAATACCATTGCAAGCAAATATATCATAGGATTCACGGTAGTTTACAACAATCCAGTAA 7212 Query 48058 CCATAGAGTTTTGCAACACC 48077 |||| |||||||| |||| Sbjct 7211 GCATACAGTTTTGCCGCACC 7192 >seq21 Length=60513 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 47938 GCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAA 47997 ||||| || || || || || ||||||||||| || | | |||| ||| ||||||||| Sbjct 27543 GCTCTGGTGATTTTTCGGGTCACAAAAGTTTCGCCCCTGCGTGGACTTTCGTGATTAAAA 27484 Query 47998 AGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTAC 48057 ||||||||| | || ||| | || | || |||||||| ||||| || |||||||| Sbjct 27483 AGAATACCATTGCAAGCAAATATATCATAGGATTCACGGTAGTTTACAACAATCCAGTAA 27424 Query 48058 CCATAGAGTTTTGCAACACC 48077 |||| |||||||| |||| Sbjct 27423 GCATACAGTTTTGCCGCACC 27404 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 47938 GCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAA 47997 ||||| || || || || || ||||||||||| || | | |||| ||| ||||||||| Sbjct 56601 GCTCTGGTGATTTTTCGGGTCACAAAAGTTTCGCCCCTGCGTGGACTTTCGTGATTAAAA 56542 Query 47998 AGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTAC 48057 ||||||||| | || ||| | || | || |||||||| ||||| || |||||||| Sbjct 56541 AGAATACCATTGCAAGCAAATATATCATAGGATTCACGGTAGTTTACAACAATCCAGTAA 56482 Query 48058 CCATAGAGTTTTGCAACACC 48077 |||| |||||||| |||| Sbjct 56481 GCATACAGTTTTGCCGCACC 56462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665448422655640