Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 116 1e-20 >seq3 Length=4840458 Score = 116 bits (128), Expect = 1e-20 Identities = 181/256 (71%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 302562 AATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGT 302621 || ||| ||| |||||| ||| || | |||||||||||| ||||| ||| || ||| Sbjct 294013 AACCATTATGGATTCCATGGCCTTCATCAGACGACGCTGAATGTAACCGGTTTCAGCTGT 294072 Query 302622 TTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTC 302681 || |||||||||||||| | ||| ||||||||||||| || |||||||| | ||| Sbjct 294073 CTTAACAGCTGTATCAATCAAACCCTCACGACCACCCATTGCGTGGAAGAAAAACTCGGT 294132 Query 302682 CGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTC 302741 ||| || || | | ||||| |||||||||| || | | |||||| | ||| Sbjct 294133 TGGTGTAAGACCGGCTAGGTAGGAGTTCTCAACGAAGCCTCTTGACTCGGGACCGTAGTC 294192 Query 302742 GAACTTG-GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCAT 302800 | |||| |||| || || || || | || | | ||| |||| | || || || | Sbjct 294193 G-TCTTGAATAAAATGGGGAAGAGTACGGTGCCTGAAACCGAATGGCACGCGTTTACCCT 294251 Query 302801 CAACGTTCTGCTGTCC 302816 |||| |||||||| || Sbjct 294252 CAACATTCTGCTGCCC 294267 Score = 114 bits (126), Expect = 4e-20 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 303607 TCAGTCTCTGATTCTTCATCTTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCA 303666 |||| || || ||| || ||| |||| ||| | |||||| |||||||||||||||||| Sbjct 295091 TCAGCCTTTGTTTCAACAGATTGAGGCAAATGAAGATTCATTTCATCACCGTCAAAATCA 295150 Query 303667 GCATTATACGGCTTTGTGTCCGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACA 303726 || || ||||| ||| | | | |||| || || || | ||| || || || Sbjct 295151 GCGTTGTACGGTGAAGTGACAGACAAATTCAGACGAAATGT-TGACCATGG--CAAGACG 295207 Query 303727 CGGGCTTTATGACACATCATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCACG 303786 || || | |||||||||||||||||| ||||||| || |||||||||||||||| || Sbjct 295208 CGCACTCTGTGACACATCATAGACATTTTGTGTAGGGTGGGCTGACGATTGAAAACAACA 295267 Query 303787 GGGTCACCGTTTAATACATGACGATGAAC 303815 |||| |||| | | ||| || | ||| Sbjct 295268 AAGTCATCGTTCAGCATATGGCGCTCAAC 295296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471713373696599