Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq137 147 2e-30 seq9 129 5e-25 >seq137 Length=909340 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||| || ||| | ||||| |||||||| || || |||||||| || || ||| || Sbjct 669155 ACGATGCAAATTTTTGTGAAAACTCTAACCGGCAAGACAATTACGCTGGAGGTGGAACCC 669096 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||||| | || | || || ||||| |||||||| || || || || || || Sbjct 669095 AGCGACACAATCGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGAC 669036 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || ||||| | |||||||| ||||| ||| |||| ||| | | | |||| || ||| Sbjct 669035 CAGCAACGCCTAATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTAT 668976 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||||||||| || || || ||| | ||| | ||| | || || ||| Sbjct 668975 AACATTCAAAAGGAGTCAACCCTCCACCTTGTGCTCCGACTTCGTGGTGGC 668925 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| ||||||| || ||||| || || || || | || || || | | Sbjct 668240 ATGCAGATATTTGTTAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCGAGT 668181 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||| | || || |||||||| ||||| || || || || || || || Sbjct 668180 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 668121 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || || ||| |||||||| | | |||| || || ||| Sbjct 668120 CAACGCTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAAC 668061 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||||||||| |||| ||||| || ||| Sbjct 668060 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 668013 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| ||||| || ||||| || ||||| || || | | Sbjct 675072 ATGCAGATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 675131 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | || || ||||| ||||||||||| || || || || || || Sbjct 675132 GATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAG 675191 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || |||||| |||| ||| | | | || || || ||| Sbjct 675192 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAAC 675251 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || ||||||||| |||| ||||| || || Sbjct 675252 ATTCAGAAGGAGTCAACGCTTCACTTGGTGCTGCGTTTGCGTGGTGG 675298 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | |||||||| || || || || |||||| | || || || | | Sbjct 675300 ATGCAAATATTTGTGAAAACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 675359 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||| | || || |||||||| ||||| || || || || || || || Sbjct 675360 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCAGACCAG 675419 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || || ||| |||||||| | | |||| || || ||| Sbjct 675420 CAACGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAAC 675479 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| ||||| || ||||||||| |||| ||||| || || Sbjct 675480 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGG 675526 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || |||||||| ||||| || || || || || || ||| Sbjct 657575 ATGCAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGAGCCCAGT 657516 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||| | || || |||||| |||||||| || || || || || ||||| Sbjct 657515 GACTCGATAGAGAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCACCGGATCAG 657456 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||||| || || ||| |||| ||| | | | |||| || || ||| Sbjct 657455 CAACGCCTGATCTTTGCAGGAAAGCAGTTGGAAGATGGTCGCACCTTGTCTGACTACAAC 657396 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGA 24934 ||||||||||| || || || ||| | ||| | || | || |||||| || Sbjct 657395 ATTCAAAAGGAGTCCACCCTTCACCTTGTGCTTCGTCTTCGTGGAGGCTGA 657345 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || ||||| || ||||| || || | | Sbjct 675528 ATGCAGATCTTCGTGAAGACGCTGACTGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 675587 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||| | || || ||||||||| ||||| || || || ||||| || ||| Sbjct 675588 GACTCGATAGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAA 675647 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTAT 24880 ||||| ||||||||||| || || ||| |||| ||| ||| ||| |||| || || Sbjct 675648 CAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCG---CACATTGTCCGACTAC 675704 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||||| ||||||||||| || ||| | ||| Sbjct 675705 AACATTCAGAAGGAATCGACCCTTCACCTTGTG 675737 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | |||||||| || || || || |||||| | || || || | | Sbjct 667556 ATGCAAATATTTGTGAAAACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 667497 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||| | || || |||||||| ||||| || || || || || || || Sbjct 667496 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 667437 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || || ||| |||||||| | | |||| || || ||| Sbjct 667436 CAACGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAAC 667377 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || ||||||||| |||| ||||| || || Sbjct 667376 ATTCAGAAGGAGTCAACGCTTCACTTGGTGCTGCGTTTGCGTGGTGG 667330 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || |||||||| || || || ||||| ||||| ||| ||| | Sbjct 668696 ATGCAGATTTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAGC 668637 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | ||||| ||||||||||| || ||||| || || || || || Sbjct 668636 GATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAAGGCATTCCACCAGACCAG 668577 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || || || |||| ||| | | | || ||||| ||| Sbjct 668576 CAGCGTTTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCTGATTACAAC 668517 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||||||| || || || || | ||| | ||| | || || ||| Sbjct 668516 ATTCAAAAGGAGTCAACGCTTCATCTTGTGCTACGACTTCGTGGTGGC 668469 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || |||||||| || || || ||||| ||||| ||| ||| | Sbjct 668924 ATGCAGATTTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAGC 668865 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | ||||| ||||||||||| || ||||| || || || || || Sbjct 668864 GATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAAGGCATTCCACCAGACCAG 668805 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || || || |||| ||| | | | || ||||| ||| Sbjct 668804 CAGCGTTTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCTGATTACAAC 668745 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||||||| || || || || | ||| | ||| | || || ||| Sbjct 668744 ATTCAAAAGGAGTCAACGCTTCATCTTGTGCTACGACTTCGTGGTGGC 668697 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || ||||| || || || ||||||||||| ||||| ||| | | | Sbjct 668012 ATGCAAATATTCGTGAAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAGC 667953 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||| || || || || || || || || ||||| Sbjct 667952 GACACAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCGCCTGATCAG 667893 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || || ||| |||||||| | | | || || || ||| Sbjct 667892 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACTTTATCTGACTACAAC 667833 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||||||||| || || | ||| | || |||| || || Sbjct 667832 ATTCAGAAGGAATCGACCCTCCATCTCGTGCTTCGTCTGCGTGGTGG 667786 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || |||||||| || ||||| ||||| ||||| ||| ||| Sbjct 668468 ATGCAGATCTTTGTCAAGACTCTAACCGGCAAGACTATAACGCTAGAAGTTGAACCCAGT 668409 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | ||||| ||||||||||| || || || || || || |||||| Sbjct 668408 GATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAGGGCATTCCGCCAGATCAA 668349 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||| || || || || ||| |||| || | | | || ||||| ||| Sbjct 668348 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTCGCACTCTTTCTGATTACAAC 668289 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || || | ||| | ||| | || || || Sbjct 668288 ATTCAGAAGGAGTCAACGCTTCATCTCGTGCTTCGACTCCGTGGTGG 668242 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||||| ||||| || ||||| || ||||| || || | | Sbjct 667784 ATGCAAATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 667725 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | || || ||||| ||||||||||| || || || || || || Sbjct 667724 GATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAG 667665 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || |||||| |||| ||| | | | || || || ||| Sbjct 667664 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAAC 667605 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || ||| ||||| | || |||| || ||| Sbjct 667604 ATTCAGAAGGAGTCAACGCTTCACCTGGTGCTTCGTCTGCGTGGTGGC 667557 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || ||||| || ||||| || || | | Sbjct 667328 ATGCAGATCTTCGTGAAGACGCTGACTGGGAAGACTATCACCCTCGAGGTTGAGCCGAGT 667269 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | || || |||||| |||||||| || || || || || || ||| Sbjct 667268 GATTCGATTGAGAACGTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCCCCAGACCAA 667209 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACAT-GTCAGATTAT 24880 ||||| |||||||| || || || ||| |||| ||| ||| |||| ||| || || Sbjct 667208 CAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGTCGC---ACATTGTCCGACTAC 667152 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||||| ||||||||||| || ||| | ||| Sbjct 667151 AACATTCAGAAGGAATCGACCCTTCACCTTGTG 667119 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || | || || ||||| || || || || || || ||| Sbjct 658032 GATGCAAATCTTCGTGAAGACTTTGACTGGCAAAACAATCACACTGGAGGTGGAGCCCAG 657973 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | |||| | || || ||||| || ||||| || || || || || || || Sbjct 657972 TGACTCGATAGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCACCGGACCA 657913 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| |||||||||| || || ||| |||| ||| | | | |||| || || || Sbjct 657912 GCAACGCCTGATCTTTGCAGGAAAGCAGTTGGAAGATGGTCGCACCTTGTCTGACTACAA 657853 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 ||| ||||||||||| || || || |||| Sbjct 657852 CATCCAAAAGGAATCCACCCTTCATCTTG 657824 >seq9 Length=3474131 Score = 129 bits (142), Expect = 5e-25 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || ||||| || || || || || || | | Sbjct 2738260 ATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAGT 2738319 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | |||||| ||| |||||||||||||| |||||||| || |||||| Sbjct 2738320 GATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCAA 2738379 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | ||||| ||||| || ||| ||||||| | | | | || |||||||| Sbjct 2738380 CAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCTGATTATAAT 2738439 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||||||||| |||||||| || |||| Sbjct 2738440 ATTCAAAAGGAGTCGACACTCCATCTTG 2738467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449866517699560