Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5 145 1e-28 seq567 138 2e-26 seq296 138 2e-26 seq329 114 2e-19 >seq5 Length=4770536 Score = 145 bits (160), Expect = 1e-28 Identities = 232/331 (70%), Gaps = 13/331 (4%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||| || |||||||||| ||||| |||||| |||||| |||||||| || |||||| Sbjct 3307368 CCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTC 3307309 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTG--CCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||||||| ||||||| || || || || || || || | ||| |||| || || | Sbjct 3307308 TTGAGCCAGAAGATGG--AAGCAAATGAACCAGAAAAGAATACGCCTTCGATAGCAGCGA 3307251 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTT---GATCCACTTCATCG 794515 | | || || ||||| || || | | ||| ||| || |||||| | | || Sbjct 3307250 ACGCCACCAGACGCTCCGC------GTACGGTGCCTTTTTATTCGCAATCCACCTAAGCG 3307197 Query 794516 CCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 794575 |||| || ||||| || || | |||| ||| | |||||| ||| || ||| Sbjct 3307196 CCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAACAGAAAGTCGC 3307137 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 || | ||| |||||||||||||| || || || || ||||| |||| || || |||| Sbjct 3307136 GTTCTATCGGATCCTTGACGTAGGTATCAATCAGAAGAGAGTACATCTCAGAATGAATGT 3307077 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 |||| | |||| || | |||||||| || Sbjct 3307076 TTTCCACAGCGACTTGCATTCCATAAAAACA 3307046 Score = 87.8 bits (96), Expect = 3e-11 Identities = 146/205 (71%), Gaps = 12/205 (6%) Strand=Plus/Minus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 || |||| || || || |||||||| ||||| || || || ||| | |||| ||| || Sbjct 120107 CGGTGTATTTCGTTACTGCCTTGGTGCCCTCGGACACCGCATGCTTCGCCAATTCACCCG 120048 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG-TTG-CG-CTTGT 1485583 | | | ||||| || || ||||| || || | ||| ||||| ||| || ||| | Sbjct 120047 GAAGCAGTAGGCGAACAGCAGTCTGAATTTCTC---TGC---TCGTGATTGTCGACTTTT 119994 Query 1485584 TAGTGC---GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAA 1485640 || || ||||||| || | || ||| | | | ||||| || | ||||||||||| | Sbjct 119993 TATTGTAGTGCGCCAGACGACTGGACTCAGCGGCAATGCGCTCAAAGATGTCGTTGACGA 119934 Query 1485641 ACGAGTTCATGATCGACATCGATTT 1485665 | |||||||| |||||||| | ||| Sbjct 119933 AGGAGTTCATAATCGACATAGCTTT 119909 >seq567 Length=291906 Score = 138 bits (152), Expect = 2e-26 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || || |||||| | |||| || || ||| Sbjct 220195 TGTACTTGGTCACAGCCTTCGTGCCCTCCGACACCGCGTGCTTCGCCAACTCTCCCGGCA 220136 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||| ||||| ||| | ||| || |||||| | Sbjct 220135 GCAGCAGACGCACTGCAGTCTGAATCTCTCGGCTCGTGATAGTCGACTTCTTGTTGTAGT 220076 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| || | | ||||| | | || || |||| |||||||| || || ||||||| Sbjct 220075 GCGCCAACCGACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 220016 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| || ||||||||| ||| ||||||||||| |||||||||| Sbjct 220015 TGATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAGCACCTTGT 219956 Query 1485710 A 1485710 | Sbjct 219955 A 219955 Score = 138 bits (152), Expect = 2e-26 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || || |||||| | |||| || || ||| Sbjct 238469 TGTACTTGGTCACAGCCTTCGTGCCCTCCGACACCGCGTGCTTCGCCAACTCTCCCGGCA 238410 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||| ||||| ||| | ||| || |||||| | Sbjct 238409 GCAGCAGACGCACTGCAGTCTGAATCTCTCGGCTCGTGATAGTCGACTTCTTGTTGTAGT 238350 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| || | | ||||| | | || || |||| |||||||| || || ||||||| Sbjct 238349 GCGCCAACCGACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 238290 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| || ||||||||| ||| ||||||||||| |||||||||| Sbjct 238289 TGATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAGCACCTTGT 238230 Query 1485710 A 1485710 | Sbjct 238229 A 238229 Score = 138 bits (152), Expect = 2e-26 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || || |||||| | |||| || || ||| Sbjct 268219 TGTACTTGGTCACAGCCTTCGTGCCCTCCGACACCGCGTGCTTCGCCAACTCTCCCGGCA 268278 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||| ||||| ||| | ||| || |||||| | Sbjct 268279 GCAGCAGACGCACTGCAGTCTGAATCTCTCGGCTCGTGATAGTCGACTTCTTGTTGTAGT 268338 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| || | | ||||| | | || || |||| |||||||| || || ||||||| Sbjct 268339 GCGCCAACCGACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 268398 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| || ||||||||| ||| ||||||||||| |||||||||| Sbjct 268399 TGATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAGCACCTTGT 268458 Query 1485710 A 1485710 | Sbjct 268459 A 268459 >seq296 Length=41840 Score = 138 bits (152), Expect = 2e-26 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || || |||||| | |||| || || ||| Sbjct 29801 TGTACTTGGTCACAGCCTTCGTGCCCTCCGACACCGCGTGCTTCGCCAACTCTCCCGGCA 29742 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||| ||||| ||| | ||| || |||||| | Sbjct 29741 GCAGCAGACGCACTGCAGTCTGAATCTCTCGGCTCGTGATAGTCGACTTCTTGTTGTAGT 29682 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| || | | ||||| | | || || |||| |||||||| || || ||||||| Sbjct 29681 GCGCCAACCGACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 29622 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| || ||||||||| ||| ||||||||||| |||||||||| Sbjct 29621 TGATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAGCACCTTGT 29562 Query 1485710 A 1485710 | Sbjct 29561 A 29561 >seq329 Length=95630 Score = 114 bits (126), Expect = 2e-19 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || |||||||| ||||| || || |||||| | |||| || ||| ||| Sbjct 54818 TGTATTTGGTCACAGCCTTGGTGCCCTCCGACACCGCGTGCTTAGCCAACTCACCGGGCA 54877 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||||||||| | | ||| || |||||| Sbjct 54878 GCAGCAGACGCACAGCAGTCTGGATCTCTCTACTCGTGATTGTCGATTTCTTGTTGTAAT 54937 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| |||| | |||| | | || || |||| ||||| || || || ||||||| Sbjct 54938 GCGCCAAACGGCTCGATTCGGCGGCAATCCGCTCGAAGATGTCATTCACGAAGGAGTTCA 54997 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 |||||||||||| || ||||||||| ||| |||||||| || Sbjct 54998 TGATCGACATCGCCTTCGATGAGATGCCCGTGTCTGGGTGCACTTG 55043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915658467801353