Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq137 140 2e-28 seq9 127 1e-24 seq383 98.7 6e-16 >seq137 Length=909340 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | ||| | ||| |||| ||||| || ||||||||||||||| ||||| || Sbjct 668014 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 668073 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | |||| |||| |||| |||||||| || ||||||| ||||||||||| | || Sbjct 668074 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCCGGTGGG 668133 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || ||| ||||||| ||| | | ||| || Sbjct 668134 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 668193 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || |||||||| || ||||| |||||||| Sbjct 668194 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 668240 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| |||| |||||| |||||||| ||||| || | | |||| |||| Sbjct 657364 AGCACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTGCGACCATCT 657423 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||| || |||||||| |||||||| || | || | ||||||||||| Sbjct 657424 TCCAACTGCTTTCCTGCAAAGATCAGGCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCT 657483 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| || || ||||||| ||| ||| ||| || || | || || || Sbjct 657484 TGAATCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTT 657543 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || ||||||||||| Sbjct 657544 TTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 657575 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| |||||||||||||| ||||| || | |||| |||| Sbjct 667117 AGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCT 667176 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || |||||||||| |||||| |||||| | || | ||||||||||| Sbjct 667177 TCCAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCT 667236 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| || ||| | ||||| ||| | | ||| || || | ||| || ||| Sbjct 667237 TGAATCTTTGCCTTCACGTTCTCAATCGAATCACTCGGCTCAACCTCGAGGGTGATAGTC 667296 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || ||||||||||| Sbjct 667297 TTCCCAGTCAGCGTCTTCACGAAGATCTGCAT 667328 Score = 125 bits (138), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | ||| | ||| |||| ||||| || ||||||||||||||| ||||| || Sbjct 675298 CCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAA 675239 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| |||| || || || || ||||||| || ||||||||| | || Sbjct 675238 AGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGG 675179 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||| ||||| | || || || || || || ||||| ||| | | ||| | Sbjct 675178 ATACCCTCTTTGTCTTGAATCTTGGCCTTCAC--ATTCTCAATCGAATCACTAGGCTCAA 675121 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 | || | ||| || ||||| || || || ||||| ||||||||||||||||| Sbjct 675120 CCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATCTGCATGAT 675069 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| |||||||||||||| ||||| || | |||| |||| Sbjct 675739 AGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCT 675680 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || ||||||| |||||| |||||| | || | ||||||||||| Sbjct 675679 TCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCC 675620 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| || || ||||||| ||| | | ||| || || | ||| || ||| Sbjct 675619 TGGATCTTTGCCTTCACATTCTCTATCGAGTCACTAGGCTCAACCTCGAGGGTGATAGTC 675560 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || ||||||||||| Sbjct 675559 TTCCCAGTCAGCGTCTTCACGAAGATCTGCAT 675528 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | ||| | ||| |||| ||||| || ||||||||||||||| ||||| || Sbjct 675526 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 675467 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | |||| |||| |||| |||||||| || ||||||| |||||||||||| | || Sbjct 675466 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGG 675407 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || ||| ||||||| ||| | | ||| || Sbjct 675406 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 675347 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || || ||||| || || || || || ||||| || ||||| Sbjct 675346 TCCAACGTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 675300 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | ||| | ||| |||| ||||| || ||||||||||||||| ||||| || Sbjct 667330 CCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAC 667389 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | |||| |||| |||| |||||||| || ||||||| ||||||||||| | || Sbjct 667390 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCCGGTGGG 667449 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || ||| ||||||| ||| | | ||| || Sbjct 667450 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 667509 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || || ||||| || || || || || ||||| || |||||| Sbjct 667510 TCCAACGTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCATG 667557 Score = 114 bits (126), Expect = 8e-21 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| || ||||||||||||||| ||||| || || |||| |||| Sbjct 667573 AGCACCAGGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCATCT 667632 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || || || || ||||||| || ||||||||| | || | ||||| ||||| Sbjct 667633 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCCTCTTTGTCT 667692 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || ||||| ||| | | ||| || || | ||| || | Sbjct 667693 TGAATCTTGGCCTTCAC--ATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAG 667750 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || ||||| |||||||| ||||| Sbjct 667751 TCTTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 667784 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| |||| ||||| || ||||| ||||| || | | |||| |||| Sbjct 657820 AGTACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCT 657879 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||| || |||||||| ||||||||||| | || | ||||||||||| Sbjct 657880 TCCAACTGCTTTCCTGCAAAGATCAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCC 657939 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || ||||||| ||| ||| ||| || || | || || || Sbjct 657940 TGAATCTTCGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTT 657999 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| || ||||| ||||| Sbjct 658000 TTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 658031 Score = 105 bits (116), Expect = 4e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| || || || || |||| | || |||| ||||| || ||||| Sbjct 668277 CTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAA 668336 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| || || || ||| |||| | |||||||| || | || || || ||| Sbjct 668337 AATCAAACGCTGTTGATCTGGCGGAATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTT 668396 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | ||||| ||| ||| || || || | ||||| ||||| || || || ||||| || Sbjct 668397 CTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATAGTCTTGCCGGTTAGAGTCTTGAC 668456 Query 34966 AAAGATCTGCATG 34978 ||||||||||||| Sbjct 668457 AAAGATCTGCATG 668469 Score = 105 bits (116), Expect = 4e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| |||||||| || || || || |||| |||| |||| |||||| || || || Sbjct 668505 CTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAA 668564 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || ||||||||| | || | || ||||| || | || || || ||| Sbjct 668565 GATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTT 668624 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | ||||| || ||| || || || | ||||||||||| || || || ||||| || Sbjct 668625 CTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGAC 668684 Query 34966 AAAGATCTGCATG 34978 ||| ||||||||| Sbjct 668685 AAAAATCTGCATG 668697 Score = 105 bits (116), Expect = 4e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| |||||||| || || || || |||| |||| |||| |||||| || || || Sbjct 668733 CTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAA 668792 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || ||||||||| | || | || ||||| || | || || || ||| Sbjct 668793 GATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTT 668852 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | ||||| || ||| || || || | ||||||||||| || || || ||||| || Sbjct 668853 CTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGAC 668912 Query 34966 AAAGATCTGCATG 34978 ||| ||||||||| Sbjct 668913 AAAAATCTGCATG 668925 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| |||||| |||||||||||||| || ||| |||| |||| Sbjct 668941 AGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCT 669000 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || ||||| || ||||||||||| | || | ||||||||||| Sbjct 669001 TCCAACTGCTTCCCCGCAAAGATTAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCT 669060 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || ||| || || || | || || | Sbjct 669061 TGAATCTTCGCCTTCAC--ATTCTCGATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTG 669118 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || || || ||||| || ||||| Sbjct 669119 TCTTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 669152 >seq9 Length=3474131 Score = 127 bits (140), Expect = 1e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| ||||| ||||| || || || | ||| | || |||| ||||| |||||||| Sbjct 2738451 CTCCTTTTGAATATTATAATCAGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAA 2738392 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || ||||| || ||| | || | ||||| ||||| | |||||| ||| ||| Sbjct 2738391 GATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTT 2738332 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || || ||| | | ||| || |||| ||||||||| ||||| ||||| ||||| || Sbjct 2738331 CTCAATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAAC 2738272 Query 34966 AAAGATCTGCATGAT 34980 ||| || ||||| || Sbjct 2738271 AAAAATTTGCATTAT 2738257 >seq383 Length=735259 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| |||||||||||| || || || |||| | || |||| Sbjct 365922 AGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCC 365863 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||| || || || || || || || |||||| | || | |||||||||||| Sbjct 365862 TCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCT 365803 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || || || || |||||| |||| || || | Sbjct 365802 TGAATCTTAGCCTTCAC--ATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAG 365745 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || || || || || || ||||| ||||||||| Sbjct 365744 TTTTGCCGGTAAGAGTTTTCACAAAAATCTGCATG 365710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325670861231213