Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq122 86.0 5e-12 seq137 82.4 6e-11 >seq122 Length=888848 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 105086 GCACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGA 105145 ||||||||||||||| ||||| ||||| || || | | |||||||| || || |||| Sbjct 494933 GCACGGCTTTCACGTCCACGAATTCGGTGACACAACACAAGGCTGCACCTCGGCTGGCGC 494874 Query 105146 GCACTTCAA-CCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCG 105204 ||||| || ||| ||| || |||| ||||| ||||| || || || || | || || | Sbjct 494873 CCACTTTAATCCCCACG-GCAAAAACCACGGTGCTCCTGATGCTGCTGAGCGACATGTTG 494815 Query 105205 GCGACCTGGGCAATGT 105220 | ||||| || || || Sbjct 494814 GGGACCTCGGTAACGT 494799 >seq137 Length=909340 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| |||||| |||| ||||| || ||||| | || ||| | || Sbjct 669152 ATGCAAATTTTTGTGAAAACTCTAACCGGCAAGACAATTACGCTGGAGGTGGAACCCAGC 669093 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||| || || || ||| | || ||| ||| Sbjct 669092 GACACAATCGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAG 669033 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | || || | |||||| || ||| |||| || | || || | ||||| ||| Sbjct 669032 CAACGCCTAATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTATAAC 668973 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||||||||| || | ||| | ||| Sbjct 668972 ATTCAAAAGGAGTCAACCCTCCACCTTGTG 668943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398849931534103