Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq137 134 1e-26 seq383 104 2e-17 seq9 82.4 6e-11 >seq137 Length=909340 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||||||||||||||| |||||||| || || || |||||||| || || | | Sbjct 675298 CCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAA 675239 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | |||||||||||| | ||||| | ||||| || || || Sbjct 675238 AGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGG 675179 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||||||||||||||| ||| || | || ||| | || | | ||| | | || || Sbjct 675178 ATACCCTCTTTGTCTTG-AATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAAC 675120 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| || || || | || || ||||| |||||||| Sbjct 675119 CTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATCTGCAT 675072 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| ||||| | ||||| ||||| || ||||||||||| || || | Sbjct 657349 CCTCCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 657408 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || | || || || ||| | |||| | |||||||||||| ||| Sbjct 657409 AAGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGGCGTTGCTGATCCGGTGGA 657468 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| |||||||| ||| |||| || ||| | |||| | |||| | || || Sbjct 657469 ATGCCCTCCTTGTCTTG-AATCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCCAC 657527 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || |||||||| |||| || || || || ||||||||| Sbjct 657528 CTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 657576 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||||||||||||||| |||||||| || || || |||||||| || || | Sbjct 668014 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 668073 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | || || || ||| | ||||| | |||||| ||||| || Sbjct 668074 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCCGGTGGG 668133 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || || | |||| | |||| | || || Sbjct 668134 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 668193 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || ||||| || | ||||||||||||||||||||| Sbjct 668194 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 668240 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| ||||| | ||| || || ||||| || |||||||| || || | Sbjct 667786 CCACCACGCAGACGAAGCACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAT 667845 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | || ||||||||| | ||||| | |||||||| |||||| Sbjct 667846 AAAGTGCGACCATCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGATCAGGCGGA 667905 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| || || || ||| || | || ||| | || | ||||| | |||| || Sbjct 667906 ATACCCTCCTTATCCTG-AATCTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCAC 667964 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || ||||| || ||||| | || || || ||||| ||||| Sbjct 667965 TTCCAGCGTAATAGTCTTCCCAGTCAGCGTCTTCACGAATATTTGCAT 668012 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| ||||||| |||||||| || || || |||||||| || || | | Sbjct 667558 CCACCACGCAGACGAAGCACCAGGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAA 667617 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | |||||||||||| | ||||| | ||||| || || || Sbjct 667618 AGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGG 667677 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||||||||||||||| ||| || | || ||| | || | | ||| | | || || Sbjct 667678 ATACCCTCTTTGTCTTG-AATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAAC 667736 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| || || || | || || ||||| || ||||| Sbjct 667737 CTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 667784 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| |||||||| ||||| ||||| || || | | ||||||| Sbjct 657816 ACGGAGTACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACC 657875 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || || ||| | |||| | |||||| ||||| ||||| ||||| || Sbjct 657876 ATCTTCCAACTGCTTTCCTGCAAAGATCAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTT 657935 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| || | || ||| | |||| | |||| | || || || || || | Sbjct 657936 GTCCTG-AATCTTCGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGA 657994 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||||||||| || || || || || || ||||| Sbjct 657995 TTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 658031 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||||||||||||||| |||||||| || || || |||||||| || || | Sbjct 667330 CCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAC 667389 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | || || || ||| | ||||| | |||||| ||||| || Sbjct 667390 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCCGGTGGG 667449 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || || | |||| | |||| | || || Sbjct 667450 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 667509 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || || ||||| | ||||| |||||||| ||||| Sbjct 667510 TCCAACGTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 667556 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | ||||||||| || || ||||||||||| ||||| | || ||||| | Sbjct 668482 CGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCA 668541 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||| || |||||| | ||||| | ||||| || || ||||| || || || Sbjct 668542 TCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTA 668601 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || || || | || | | || |||| ||||| || ||||| Sbjct 668602 TCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATG 668661 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| |||| || || ||||| |||||||| Sbjct 668662 GTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 668696 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | ||||||||| || || ||||||||||| ||||| | || ||||| | Sbjct 668710 CGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCA 668769 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||| || |||||| | ||||| | ||||| || || ||||| || || || Sbjct 668770 TCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTA 668829 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || || || | || | | || |||| ||||| || ||||| Sbjct 668830 TCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATG 668889 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| |||| || || ||||| |||||||| Sbjct 668890 GTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 668924 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | || || || || || |||||||||||||| || | | ||||||| | Sbjct 668938 CGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCA 668997 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | || || || ||| | || | | |||||| ||||| ||||| ||||| ||| Sbjct 668998 TCTTCCAACTGCTTCCCCGCAAAGATTAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTG 669057 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || | || ||| | || | ||||| |||| || || || || || Sbjct 669058 TCTTG-AATCTTCGCCTTCACATTCTCGATTGTGTCGCTGGGTTCCACCTCCAGCGTAAT 669116 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| |||| ||||| ||||| || ||||| Sbjct 669117 TGTCTTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 669152 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||||||||||||||| |||||||| || || || |||||||| || || | Sbjct 675526 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 675467 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | || || || ||| | ||||| | |||||| || || || Sbjct 675466 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGG 675407 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || || | |||| | |||| | || || Sbjct 675406 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 675347 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || || ||||| | ||||| |||||||| ||||| Sbjct 675346 TCCAACGTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 675300 >seq383 Length=735259 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | ||||| || || || || ||||| || ||||| | | || || | Sbjct 365925 CGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCA 365866 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||| ||||||||| | || | | || || || || ||||| ||||| ||| Sbjct 365865 TCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTG 365806 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || | || ||| | || | || || || | || || |||||||| || Sbjct 365805 TCTTG-AATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGAT 365747 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| || | ||||| ||||| |||||||| Sbjct 365746 AGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 365711 >seq9 Length=3474131 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || | ||| || || || || |||||||| |||||||| | | || || || Sbjct 2738471 AGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAATCAGAGAGAGTCCGCCCGTCC 2738412 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | || || || || | || | | ||| ||||| || || || |||||||||||| Sbjct 2738411 TCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCT 2738352 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | |||| ||| || | || | | ||| | || || ||||| ||||| ||| Sbjct 2738351 TGGATTTTTGCTTTTACGTTCTCAATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTT 2738292 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||| | || |||||||| || |||||| Sbjct 2738291 TTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 2738259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385193251514307