Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq383 109 5e-19 seq137 109 5e-19 >seq5 Length=4770536 Score = 114 bits (126), Expect = 1e-20 Identities = 186/264 (70%), Gaps = 8/264 (3%) Strand=Plus/Minus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| ||||| |||||||| ||||| || || || ||||||||||| ||||| || Sbjct 3307392 AGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTG 3307333 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 ||||| ||||||| || | |||||| |||| |||| ||||| || |||||| Sbjct 3307332 AGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAG 3307273 Query 120760 AACACGCCCTCCACGATGGCA---AAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG 120816 || ||||| | |||| ||| || || |||| ||||| || ||| ||| | || Sbjct 3307272 AATACGCCTT---CGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTTTA 3307216 Query 120817 CTGTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAA- 120875 | | |||||| | | ||||| |||||||| || || ||||||| || | ||| Sbjct 3307215 TTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCA-ACGTTTGAAT 3307157 Query 120876 CGCGTTCAGCAGCATGTCGCGCTC 120899 ||||| | ||| | |||||| || Sbjct 3307156 GGCGTTAAACAGAAAGTCGCGTTC 3307133 >seq383 Length=735259 Score = 109 bits (120), Expect = 5e-19 Identities = 146/201 (73%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTG 133520 ||| ||||| ||||| ||||||||||| || | ||| ||||| | |||||| Sbjct 365908 GGTTGACTCCTTCTGAATATTGTAATCAG--ATAAGGAACGTCCATCCTCCAATTGCTTG 365851 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || |||| || ||||| ||||| || || || || |||||||| ||||| | Sbjct 365850 CCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTAGCC 365791 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||||| | |||| |||||| || || | |||| ||||||||||| ||| Sbjct 365790 TTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGA 365731 Query 133641 GTTTTTACGAAAATCTGCATG 133661 ||||| || |||||||||||| Sbjct 365730 GTTTTCACAAAAATCTGCATG 365710 >seq137 Length=909340 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| || || || ||||| || || ||| ||| | || || | |||||| | Sbjct 657378 GGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTGCGACCA-TCTTCCAACTGCTTTC 657436 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || || ||||| || || || ||||| |||||||| |||||| || Sbjct 657437 CTGCAAAGATCAGGCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGAATCTTTGCCT 657496 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | || ||| |||||||||| || | |||| ||||||||||| |||| Sbjct 657497 TCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTTAGAG 657556 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 657557 TCTTCACGAAGATCTGCAT 657575 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || || |||||||| | ||| | | | || || | ||||| || Sbjct 668500 GTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAATTGCTTACC 668558 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | ||||||||||| || || ||||||||||| || |||||| ||| Sbjct 668559 AGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGGATCTTCGCCTT 668618 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || ||| |||| || || || | || | ||| |||||||| ||||| Sbjct 668619 TACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGT 668678 Query 133643 TTTTACGAAAATCTGCATG 133661 || || |||||||||||| Sbjct 668679 CTTGACAAAAATCTGCATG 668697 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || || |||||||| | ||| | | | || || | ||||| || Sbjct 668728 GTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAATTGCTTACC 668786 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | ||||||||||| || || ||||||||||| || |||||| ||| Sbjct 668787 AGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGGATCTTCGCCTT 668846 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || ||| |||| || || || | || | ||| |||||||| ||||| Sbjct 668847 TACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGT 668906 Query 133643 TTTTACGAAAATCTGCATG 133661 || || |||||||||||| Sbjct 668907 CTTGACAAAAATCTGCATG 668925 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | ||| ||| | || || | ||| ||||| Sbjct 675268 GTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCA-TCTTCCAACTGTTTGCC 675210 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | ||||||||||| || ||||| || || ||||| ||||| ||| Sbjct 675209 AGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTT 675150 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || || | ||||| || |||| ||||| || || ||||| || || Sbjct 675149 CACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGT 675090 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 675089 CTTCACAAAGATCTGCATG 675071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483387401665480