Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq137 122 6e-23 >seq137 Length=909340 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | |||||| | |||||| || || || ||| || || |||||||| ||||| Sbjct 675299 ACCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGA 675240 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || ||||| ||||| || ||||| |||||||||||||| ||| | || Sbjct 675239 AAGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGG 675180 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| |||||||| ||| || ||| |||| || | | || || | || | Sbjct 675179 GATACCCTCTTTGTCTTGAATCTTGGCCTTC-ACATTCTCAATCGAATCACTAGGCTCAA 675121 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | ||| || |||||||||||||| Sbjct 675120 CCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATCTGCAT 675072 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| || || || ||| || || |||||||| ||||| Sbjct 667558 CCACCACGCAGACGAAGCACCAGGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAA 667617 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || ||||| ||||| || ||||| |||||||||||||| ||| | || Sbjct 667618 AGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGG 667677 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| |||||||| ||| || ||| |||| || | | || || | || || Sbjct 667678 ATACCCTCTTTGTCTTGAATCTTGGCCTTC-ACATTCTCAATCGAATCACTAGGCTCAAC 667736 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | ||| || |||||||| |||||| Sbjct 667737 CTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCATA 667785 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||| | ||| || || || || || |||||||| || || Sbjct 667785 ACCACCACGCAGACGAAGCACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTAGTCAGA 667844 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || ||||| || || || ||||| ||||||||||||||||| |||| Sbjct 667845 TAAAGTGCGACCATCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGATCAGGCGG 667904 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || || || ||| || ||| |||| || | |||||||| | ||||| Sbjct 667905 AATACCCTCCTTATCCTGAATCTTGGCCTTC-ACATTCTCAATTGTGTCGCTAGGTTCCA 667963 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||| || || || || || | ||| || || || || ||||| Sbjct 667964 CTTCCAGCGTAATAGTCTTCCCAGTCAGCGTCTTCACGAATATTTGCAT 668012 Score = 98.7 bits (108), Expect = 7e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 |||| ||| | ||| || || ||| ||||| ||||||||||| || || ||||| | Sbjct 668482 CGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCA 668541 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||||||| || || ||||| |||||||||||||| ||| | || | ||||| || Sbjct 668542 TCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTA 668601 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || || ||| | | || | || | | ||||| | ||| || || | ||| || Sbjct 668602 TCTTGGATCTTC-GCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTAT 668660 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || |||| || || ||||| |||||||| Sbjct 668661 GGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 668696 Score = 98.7 bits (108), Expect = 7e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 |||| ||| | ||| || || ||| ||||| ||||||||||| || || ||||| | Sbjct 668710 CGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCA 668769 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||||||| || || ||||| |||||||||||||| ||| | || | ||||| || Sbjct 668770 TCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTA 668829 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || || ||| | | || | || | | ||||| | ||| || || | ||| || Sbjct 668830 TCTTGGATCTTC-GCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTAT 668888 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || |||| || || ||||| |||||||| Sbjct 668889 GGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 668924 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || | ||| | ||| || || ||| || || ||||||||||| || Sbjct 668241 ACCACCACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTCTGAATGTTGTAATCAGA 668300 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| ||||| || || || || |||||||||||||| |||||| |||| Sbjct 668301 AAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGG 668360 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || || ||| | | || | || | | || || | ||| | Sbjct 668361 AATGCCCTCCTTATCTTGGATCTTC-GCCTTTACGTTCTCAATCGAATCACTGGGTTCAA 668419 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||| || || || || |||| || || |||||||||||||| Sbjct 668420 CTTCTAGCGTTATAGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 668468 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||| | || || ||| ||| ||||| |||||||| || || | ||||| | Sbjct 657360 ACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTGCGACC 657419 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||| || ||||| ||||| |||| || |||||||| | || | || || || Sbjct 657420 ATCTTCCAACTGCTTTCCTGCAAAGATCAGGCGTTGCTGATCCGGTGGAATGCCCTCCTT 657479 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||| || |||| ||| || | | ||| || | ||||| || | |||| Sbjct 657480 GTCTTGAATCTTTGCCTTCA-CATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGA 657538 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || |||| || || || ||||||||||| Sbjct 657539 TTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 657575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328681858395840