Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq137 102 2e-16 seq9 96.9 8e-15 seq383 84.2 5e-11 >seq137 Length=909340 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| ||||| |||| ||||| |||| | | || Sbjct 657560 AAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGAGCCCAGTGACTCGATAGAGAAT 657501 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||||||| || || || ||| ||||| ||| | || ||||| Sbjct 657500 GTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCACCGGATCAGCAACGCCTGATCTTT 657441 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||||||||||||||| | || ||| | || |||||| | || || ||||| Sbjct 657440 GCAGGAAAGCAGTTGGAAGATGGTCGCACCTTGTCTGACTACAACATTCAAAAGGAGTCC 657381 Query 206365 ACTCTTCACCTTGT 206378 || ||||||||||| Sbjct 657380 ACCCTTCACCTTGT 657367 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||||||| || || || ||| || ||| ||| || | |||||| Sbjct 667253 GTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCCCCAGACCAACAACGATTGATCTTC 667194 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||||||||| | || ||| |||| |||||| | ||||| || || Sbjct 667193 GCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAACATTCAGAAGGAATCG 667134 Query 206365 ACTCTTCACCTTGT 206378 || ||||||||||| Sbjct 667133 ACCCTTCACCTTGT 667120 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| ||||| || || || ||||| ||||| ||||| |||| Sbjct 668237 CAGATATTTGTTAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCGAGTGAC 668178 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| ||||| || || || || || || |||||| ||| Sbjct 668177 TCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAGCAA 668118 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || |||||||||||||| ||||| | || ||| |||| |||||| | Sbjct 668117 CGCTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAACATT 668058 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| || |||||| Sbjct 668057 CAGAAGGAGTCGACGCTTCAC 668037 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || || || |||| |||||| |||||| |||| Sbjct 669137 AAAACTCTAACCGGCAAGACAATTACGCTGGAGGTGGAACCCAGCGACACAATCGAGAAT 669078 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || || || ||| |||||| ||| | || ||||| Sbjct 669077 GTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAGCAACGCCTAATCTTT 669018 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||||||||| | || || | || || ||| | || || ||||| Sbjct 669017 GCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTATAACATTCAAAAGGAGTCA 668958 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || |||||||| | ||||||| Sbjct 668957 ACCCTCCACCTTGTGCTCCGACTTCG 668932 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || || ||| |||||| ||| | || ||||| || |||||| Sbjct 657947 AAGATTCAGGACAAGGAGGGCATTCCACCGGACCAGCAACGCCTGATCTTTGCAGGAAAG 657888 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||||||||| | || ||| | || |||||| |||| || || || || ||||| Sbjct 657887 CAGTTGGAAGATGGTCGCACCTTGTCTGACTACAACATCCAAAAGGAATCCACCCTTCAT 657828 Query 206374 CTTGTTTTGAGACTTCGA 206391 ||||| | | |||||| Sbjct 657827 CTTGTACTCCGTCTTCGA 657810 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| || || || || || ||| || ||| ||| || | ||||| Sbjct 675603 GTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAACAACGATTGATCTTT 675662 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||||||||| | || ||| |||| |||||| | ||||| || || Sbjct 675663 GCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAACATTCAGAAGGAATCG 675722 Query 206365 ACTCTTCACCTTGT 206378 || ||||||||||| Sbjct 675723 ACCCTTCACCTTGT 675736 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| |||||||| || || || || || || ||||| ||||| |||| Sbjct 667553 CAAATATTTGTGAAAACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGTGAC 667494 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| ||||| || || || || || || |||||| ||| Sbjct 667493 TCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAGCAA 667434 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || |||||||||||||| ||||| | || ||| |||| |||||| | Sbjct 667433 CGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAACATT 667374 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| || |||||| Sbjct 667373 CAGAAGGAGTCAACGCTTCAC 667353 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| |||||||| || || || || || || ||||| ||||| |||| Sbjct 675303 CAAATATTTGTGAAAACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGTGAC 675362 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| ||||| || || || || || || || ||| ||| Sbjct 675363 TCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCAGACCAGCAA 675422 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || |||||||||||||| ||||| | || ||| |||| |||||| | Sbjct 675423 CGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAACATT 675482 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| || |||||| Sbjct 675483 CAGAAGGAGTCGACGCTTCAC 675503 >seq9 Length=3474131 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 ||| ||||| | |||||| || || || ||||| || || | |||||| |||| | ||| Sbjct 2738481 TCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAATCAGAGAGAGT 2738422 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || || || |||| |||||| |||||||||||||||||||||||| Sbjct 2738421 CCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGA 2738376 Score = 91.5 bits (100), Expect = 3e-13 Identities = 108/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||||||| || ||||| ||||| ||||| || || ||| | ||||||||||| Sbjct 2738338 AAAGCAAAA-ATCCAAGACAAAGAGGGAATACCACCAGATCAACAACGGCTTATCTTCGC 2738396 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 ||| ||||||||||| || || ||||| | | ||||| || | || || ||||| || Sbjct 2738397 CGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCTGATTATAATATTCAAAAGGAGTCGAC 2738456 Query 206367 TCTTCACCTTGTTTTGAGACTTCGA 206391 || || |||||| | ||||| ||| Sbjct 2738457 ACTCCATCTTGTTCTAAGACTACGA 2738481 >seq383 Length=735259 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| |||||| | || || || || || Sbjct 365714 CAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAGCCCTCCGAT 365773 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| ||||||||||| || || || ||| || ||| || Sbjct 365774 TCTATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAGGGGATTCCACCAGACCAACAG 365833 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||| || || || ||||| ||||| |||||| | | || | |||||||| | Sbjct 365834 CGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAATATT 365893 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||||||||| Sbjct 365894 CAGAAGGAGTCAACCCTTCACCTTGT 365919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181737109729367