Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq137 89.7 5e-13 seq122 82.4 7e-11 >seq137 Length=909340 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| |||| ||||| || | ||||||| || ||||||||||||||| | || Sbjct 675293 ACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGT 675234 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | |||||| || | | |||| | |||||| || ||||| || || || Sbjct 675233 GCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACC 675174 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||| || ||| || |||| | || | | ||| | ||||| || |||| Sbjct 675173 CTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAG 675114 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125 || | || || || || || || || | || |||||||||| Sbjct 675113 GGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATCTGCATGA 675070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || ||| || |||||| | ||| || || | | Sbjct 657382 GACTCCTTTTGAATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGCTTTCCTGCA 657441 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || || || ||||| || || ||||| || || || ||| ||| |||| Sbjct 657442 AAGATCAGGCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTCACA 657501 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | |||||||| || | || | ||||| || || ||||| || Sbjct 657502 TTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTC 657561 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 657562 ACGAAGATCTGCAT 657575 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| ||||||||||| ||||| || ||| || |||||| | ||| || || | Sbjct 668957 TTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCG 669016 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | ||||||| || || || || || || ||||| || || || ||| || |||| Sbjct 669017 CAAAGATTAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCA 669076 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || ||| | || ||||| || | ||| | || || || || ||||||| Sbjct 669077 CATTCTCGATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTTT 669136 Query 132108 TTATGAAAATCTGCAT 132123 | | ||||| ||||| Sbjct 669137 TCACAAAAATTTGCAT 669152 >seq122 Length=888848 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 51738 ACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCGCTGCCG 51797 || || || | ||| || || || ||| || || | ||||| ||||||| ||||| Sbjct 494799 ACGTTACCGAGGTCCCCAACATGTCGCTCAGCAGCATCAGGAGCACCGTGGTTTTTGCCG 494858 Query 51798 GTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGC 51857 ||| || ||||| |||| ||||| |||||||| | | ||||| ||||||||||| Sbjct 494859 TGGGGATTAAAGTGGGCGCCAGCCGAGGTGCAGCCTTGTGTTGTGTCACCGAATTCGTGG 494918 Query 51858 ACGTGGAATCCGTGC 51872 ||||| || |||||| Sbjct 494919 ACGTGAAAGCCGTGC 494933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476578272123720