Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq137 167 2e-36 seq108 91.5 1e-13 seq383 89.7 5e-13 >seq137 Length=909340 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | || |||||| || | ||| |||||| ||||||||||| |||| | Sbjct 667330 CCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAC 667389 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| |||||| || ||||| |||||||| |||||||||| || Sbjct 667390 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCCGGTGGG 667449 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | || ||| |||| |||||| Sbjct 667450 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 667509 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||| || || || || |||| |||||||||||||| ||||| Sbjct 667510 TCCAACGTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 667556 Score = 161 bits (178), Expect = 9e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | || |||||| || | ||| |||||| ||||||||||| |||| | Sbjct 675526 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 675467 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| |||||| || ||||| |||||||| |||||||| | || Sbjct 675466 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGG 675407 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | || ||| |||| |||||| Sbjct 675406 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 675347 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||| || || || || |||| |||||||||||||| ||||| Sbjct 675346 TCCAACGTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 675300 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | || |||||| || | ||| |||||| ||||||||||| |||| | Sbjct 668014 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 668073 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| |||||| || ||||| ||||| || |||||||||| || Sbjct 668074 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCCGGTGGG 668133 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | || ||| |||| |||||| Sbjct 668134 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 668193 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | ||||| |||||||||||||| Sbjct 668194 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 668240 Score = 138 bits (152), Expect = 1e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| || | |||||| || | || |||| |||||| || ||||| Sbjct 657384 CTCCTTTTGAATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGCTTTCCTGCAAA 657443 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||| |||| |||| || ||||||||| |||||| ||||| | | Sbjct 657444 GATCAGGCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATT 657503 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| || | |||||||||| ||||| ||||| || || | ||| ||||| Sbjct 657504 CTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCAC 657563 Query 35725 AAATATCTGCATTC 35738 || |||||||||| Sbjct 657564 GAAGATCTGCATTC 657577 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||||||||| || || | || ||| || | || |||| |||||| |||||||| Sbjct 668961 CTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAA 669020 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||||||| |||| || ||||||||| ||||| ||||| | | Sbjct 669021 GATTAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATT 669080 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||||||||||| ||| || || || || || | ||||||||| Sbjct 669081 CTCGATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTTTTCAC 669140 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 669141 AAAAATTTGCAT 669152 Score = 129 bits (142), Expect = 5e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| |||| ||| || || | || |||| |||||| || ||||| Sbjct 675718 TCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCTTCCAACTGCTTGCCAGCAAAG 675659 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || || ||||| | ||||| || |||||||||| ||||||| ||||| | | Sbjct 675658 ATCAATCGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTC 675599 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || ||| || | || ||||| | ||||| || || || |||| || ||||| Sbjct 675598 TCTATCGAGTCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCAGTCAGCGTCTTCACG 675539 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 675538 AAGATCTGCAT 675528 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| || | || || || | || |||| |||||| || ||||| Sbjct 667822 TCCTTCTGAATGTTGTAGTCAGATAAAGTGCGACCATCCTCCAACTGCTTGCCAGCAAAG 667881 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| |||||||| || | |||| | |||||| ||| ||||| ||||| | | Sbjct 667882 ATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCCTGAATCTTGGCCTTCACATTC 667941 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | |||||| |||| ||| || || || || |||| || ||||| Sbjct 667942 TCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGTCTTCCCAGTCAGCGTCTTCACG 668001 Query 35726 AATATCTGCAT 35736 ||||| ||||| Sbjct 668002 AATATTTGCAT 668012 Score = 109 bits (120), Expect = 5e-19 Identities = 173/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | || |||||| || | ||| |||||| ||||||||||| |||| Sbjct 675298 CCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAA 675239 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| ||| || || ||||| ||||| ||||||||||| | || Sbjct 675238 AGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGG 675179 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| ||||| ||||| ||||| | | | | || || || | || ||| Sbjct 675178 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 675119 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGCGCACAC 35749 || | ||||| || || || || | || |||||||| |||||||| || || | | | Sbjct 675118 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATCTGCATGATGAGCACGCCC 675059 Query 35750 ACACCACA 35757 || |||| Sbjct 675058 GCAGCACA 675051 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||| | ||| | ||| ||||||||||||||||||||| | Sbjct 668470 CCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAA 668529 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||||| ||||| ||||| ||||||||||| | ||| Sbjct 668530 AGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGA 668589 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| || |||||| ||| | | | | || ||||| | ||| || Sbjct 668590 ATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACT 668649 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||| || || || || || | ||| || ||||| |||||||| Sbjct 668650 TCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 668696 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||| | ||| | ||| ||||||||||||||||||||| | Sbjct 668698 CCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAA 668757 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||||| ||||| ||||| ||||||||||| | ||| Sbjct 668758 AGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGA 668817 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| || |||||| ||| | | | | || ||||| | ||| || Sbjct 668818 ATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACT 668877 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||| || || || || || | ||| || ||||| |||||||| Sbjct 668878 TCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 668924 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| |||| ||| || || | || |||| |||||| || || || Sbjct 667138 TCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCTTCCAACTGCTTGCCAGCGAAG 667197 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || || ||||| | |||| || ||||||||| |||||| ||||| | Sbjct 667198 ATCAATCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTCACGTTC 667257 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || |||| || ||||| | ||||| || || || |||| || ||||| Sbjct 667258 TCAATCGAATCACTCGGCTCAACCTCGAGGGTGATAGTCTTCCCAGTCAGCGTCTTCACG 667317 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 667318 AAGATCTGCAT 667328 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||| | ||| | ||| |||||| |||||||||||||| | Sbjct 668242 CCACCACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTCTGAATGTTGTAATCAGAA 668301 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||| ||||||||| || || ||||| ||||| || || | ||| Sbjct 668302 AGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGA 668361 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||| || |||||| ||| | | | | || || || | ||| || Sbjct 668362 ATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACT 668421 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||| || || || || || | ||| || ||||| |||||||| Sbjct 668422 TCTAGCGTTATAGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 668468 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || | ||| |||||| ||||||||||| |||| Sbjct 667558 CCACCACGCAGACGAAGCACCAGGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAA 667617 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| ||| || || ||||| ||||| ||||||||||| | || Sbjct 667618 AGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGG 667677 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| ||||| ||||| ||||| | | | | || || || | || ||| Sbjct 667678 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 667737 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || || | || |||||||| || ||||| Sbjct 667738 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 667784 >seq108 Length=963028 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 44306 AGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCTACCCATCT 44364 |||| ||||||||| |||||||| |||||||| |||||| |||||||| | |||| | | Sbjct 269256 AGGAGTTATGTGGTCAATTTGCGGAGTCCACGATCAGGGC-TGGCGAGAACGACCCGTTT 269314 Query 44365 ACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGT 44416 ||||||| | ||||||||||||| | || || ||||| |||||||| Sbjct 269315 TCGGCAAAATTCGCTACATGAACTTCGCTGGCTGTAAGAGAAAATTTGATGT 269366 >seq383 Length=735259 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||| |||||||| | |||| || | || |||| ||||| || ||||| Sbjct 365902 CTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAA 365843 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||| ||||| | |||| | ||||||||| ||||| ||||| | | Sbjct 365842 AATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTAGCCTTCACATT 365783 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||| | || ||||| | ||||| ||||| || || | ||||||||| Sbjct 365782 CTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCAC 365723 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 365722 AAAAATCTGCAT 365711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450762455797160