Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq137 127 2e-24 >seq137 Length=909340 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | || || | ||| ||||| || ||||| |||||||||||||||||||| | | Sbjct 657349 CCTCCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 657408 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || |||| || || || | ||| || |||||||| |||| || |||||||| || || Sbjct 657409 AA-GGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGGCGTTGCTGATCCGGTGG 657467 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || |||||||| ||| || || || | | ||| | ||||| Sbjct 657468 AATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCCAC 657527 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || ||||| ||||||| ||| || ||||| || |||||| Sbjct 657528 CTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 657576 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | |||||| || || || |||||||| |||||||||||||| | ||| || Sbjct 667795 AGACGAAGCACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAAAGTGCGA 667854 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| ||||| ||||| ||||||||||||||||| ||||| || || || Sbjct 667855 CCATCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGATCAGGCGGAATACCCTCC 667914 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || | ||||||| | |||||| || || ||| Sbjct 667915 TTATCCTGAATCTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTA 667974 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || ||||| |||||||| Sbjct 667975 ATAGTCTTCCCAGTCAGCGTCTTCACGAATATTTGCAT 668012 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | ||| ||||| || || || |||||||||||||| ||||| | |||| || Sbjct 668935 AGTCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGA 668994 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| || || ||||| || | || ||||| || || || ||||| || Sbjct 668995 CCATCTTCCAACTGCTTCCCCGCAAAGATTAGGCGTTGCTGGTCCGGTGGAATGCCCTCC 669054 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || || || || | ||||||| | |||||| || || ||| Sbjct 669055 TTGTCTTGAATCTTCGCCTTCACATTCTCGATTGTGTCGCTGGGTTCCACCTCCAGCGTA 669114 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||||| |||||| || ||||||||||| Sbjct 669115 ATTGTCTTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 669152 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| ||||||||||||||| || ||| || Sbjct 667567 AGACGAAGCACCAGGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGA 667626 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||||||||| ||||| |||||||||||||| || || || || || ||| Sbjct 667627 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCCTCT 667686 Query 134616 TTTTCTTGAATTTT 134629 || |||||||| || Sbjct 667687 TTGTCTTGAATCTT 667700 Score = 111 bits (122), Expect = 2e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||| ||| | ||| ||||| || ||||| ||||||||||||||| || ||| || Sbjct 675286 CGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCA 675227 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | ||||||||| ||||| |||||||||||||| || || || || || ||||| Sbjct 675226 TCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCCTCTTTG 675167 Query 134619 TCTTGAATTTT 134629 |||||||| || Sbjct 675166 TCTTGAATCTT 675156 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | |||||| | |||||| || ||||| || ||||| ||||||||||| || | Sbjct 668242 CCACCACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTCTGAATGTTGTAATCAGAA 668301 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| || | ||| || || || |||||||||||||| ||||| ||||| Sbjct 668302 AGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGA 668361 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || ||||| || || || || || | | || | ||| || Sbjct 668362 ATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACT 668421 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || ||||||| ||| || || || || ||||| Sbjct 668422 TCTAGCGTTATAGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 668468 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 |||| |||| || || | || || || || |||||||||||||| ||||||||||| | Sbjct 657803 TTCCACCTCGAAGACGGAGTACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAG 657862 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 ||| |||| || || || | ||| || |||||||| |||| || ||||| || || Sbjct 657863 ACAA-GGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGGCGTTGCTGGTCCGGT 657921 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || || ||||| || || || || | | ||| | ||| Sbjct 657922 GGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCTATCGAGTCACTGGGCTCC 657981 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || || ||||| || ||||| |||||||| Sbjct 657982 ACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 658031 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | ||| || || ||||| || ||||||||||||||||| || || ||| | Sbjct 668479 AGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGG 668538 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | || || || ||||| |||||||||||||| || || || |||||||| Sbjct 668539 CCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCC 668598 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || || || || | | ||| | ||| || || || || Sbjct 668599 TTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTT 668658 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||||| ||| || || ||||| ||||| Sbjct 668659 ATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 668696 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | ||| || || ||||| || ||||||||||||||||| || || ||| | Sbjct 668707 AGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGG 668766 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | || || || ||||| |||||||||||||| || || || |||||||| Sbjct 668767 CCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCC 668826 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || || || || | | ||| | ||| || || || || Sbjct 668827 TTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTT 668886 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||||| ||| || || ||||| ||||| Sbjct 668887 ATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 668924 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGA 134557 |||| ||| | ||| ||||| || ||||| |||||||||||||| | |||| ||| || Sbjct 668026 CGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAC-GTGCGACC 668084 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 || || | ||| || |||||||| ||||| || ||||| || || || ||||| || || Sbjct 668085 ATCCTCCAACTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCCGGTGGGATGCCCTCCTT 668144 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || || || || || || || | | ||| || ||||| || | || || Sbjct 668145 GTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAAGGTGAT 668204 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || ||||| | |||||||| || || ||||| Sbjct 668205 GGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 668240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGA 134557 |||| ||| | ||| ||||| || ||||| |||||||||||||| | |||| ||| || Sbjct 667342 CGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGACAAC-GTGCGACC 667400 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 || || | ||| || |||||||| ||||| || ||||| || || || ||||| || || Sbjct 667401 ATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCCGGTGGGATGCCCTCCTT 667460 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || || || || || || || | | ||| || ||||| || | ||||| Sbjct 667461 GTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAAT 667520 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || | ||||| || || |||||||| Sbjct 667521 TGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 667556 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGA 134557 |||| ||| | ||| ||||| || ||||| |||||||||||||| | |||| ||| || Sbjct 675514 CGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAC-GTGCGACC 675456 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 || || | ||| || |||||||| ||||| || ||||| || || || ||||| || || Sbjct 675455 ATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGGATGCCCTCCTT 675396 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || || || || || || || | | ||| || ||||| || | ||||| Sbjct 675395 GTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAAT 675336 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || | ||||| || || |||||||| Sbjct 675335 TGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 675300 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || || |||||||| ||||||||||||||| | ||| || Sbjct 667111 AGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGA 667170 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| ||||| || || ||||| || || || || || || ||||| || Sbjct 667171 CCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGAATGCCCTCC 667230 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| ||| || || || | | || || || || ||||| || Sbjct 667231 TTGTCTTGAATCTTTGCCTTCACGTTCTCAATCGAATCACTCGGCTCAACCTCGAGGGTG 667290 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || ||||| || ||||| Sbjct 667291 ATAGTCTTCCCAGTCAGCGTCTTCACGAAGATCTGCAT 667328 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || || |||||||| ||||||||||||||| | ||| || Sbjct 675745 AGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGA 675686 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| ||||| ||||| ||||| || || || || || || ||||| || Sbjct 675685 CCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGAGGAATGCCCTCC 675626 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || ||| || || || | | ||| | || || ||||| || Sbjct 675625 TTGTCCTGGATCTTTGCCTTCACATTCTCTATCGAGTCACTAGGCTCAACCTCGAGGGTG 675566 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || ||||| || ||||| Sbjct 675565 ATAGTCTTCCCAGTCAGCGTCTTCACGAAGATCTGCAT 675528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505363483288040