Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8 280 2e-70 seq5 235 8e-57 >seq8 Length=2505178 Score = 280 bits (310), Expect = 2e-70 Identities = 435/616 (71%), Gaps = 4/616 (1%) Strand=Plus/Minus Query 69508 TATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACAC 69567 || ||| |||||| || || |||||| ||| | | || || || |||| || | Sbjct 602997 TAAAGCATTTCGAACTCCTCCCCCCAACAGTCAGCAAGACCGGGGCACTCATGGGGGTCC 602938 Query 69568 ATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGA 69627 || || | |||| | | | ||| |||||| ||||| |||||||||||||||||||| Sbjct 602937 ATAAAGGTCCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGT 602878 Query 69628 GCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGA 69687 || | |||||||| | | | | |||||||| || || || || | || | | Sbjct 602877 GCGAGGAAGAGATCCCGAGCGCGAATTTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACA 602818 Query 69688 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTA 69747 |||| || | ||| | |||||||||||| ||||| || || | | | || |||||||| Sbjct 602817 AACTGCAGTACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTG 602758 Query 69748 TTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATA 69807 || || |||||||| | || | || ||| | || |||| | |||||||| | || | Sbjct 602757 TTGCCGCCCTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGA 602698 Query 69808 CCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCG-CGAATATTACTAAT 69866 ||||| || | ||||| ||||||| ||| ||| | |||||| || || || Sbjct 602697 CCATTGGACTCCCCATTAGTTCCAGCGATA-AACGTATTCTTGCTTCGGATGCAGTGAAC 602639 Query 69867 AGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATA 69926 | ||||| || || || || |||| ||||| || ||||| |||| | |||||||| Sbjct 602638 ATTGAGACCGATCCCACCCGCGCTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATA 602579 Query 69927 TATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATG 69986 ||||||||| || || || ||| |||| |||| | ||||||||| ||||| ||| | | Sbjct 602578 TATACCCTCGATACTGTCGTCTTTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTA 602519 Query 69987 TATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAG 70046 || || |||||||| | || || || |||||| | ||||| |||||||| | || Sbjct 602518 AGGCGTCCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAG 602459 Query 70047 ATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCA 70105 |||||| || |||||||| | || | ||| ||| |||||| ||||| | ||| |||| Sbjct 602458 ATTGTAGGTCTCAATAGCAGCGTCCACATCTTCAC-CATGAATACCTATTGAGACGCGCA 602400 Query 70106 TCAACATATGCTGAGG 70121 | ||||| | |||||| Sbjct 602399 TAAACATGTACTGAGG 602384 >seq5 Length=4770536 Score = 235 bits (260), Expect = 8e-57 Identities = 434/633 (69%), Gaps = 5/633 (1%) Strand=Plus/Minus Query 39601 ATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTC 39660 ||||||||| || | ||| || || || || ||||| ||||||| ||| || | || Sbjct 3307405 ATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTC 3307346 Query 39661 GTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAA 39720 |||| ||| ||||| |||||||| ||||||||||| |||||||| || |||| |||||| Sbjct 3307345 GTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAA 3307286 Query 39721 AGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT 39780 || ||||||||||| | |||||| | || || || || || || | ||| |||| Sbjct 3307285 TGAACCAGAAAAGAATACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGG 3307226 Query 39781 TG---TATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCAT 39837 || | | ||| |||||| | | |||||||| || ||||| ||||| |||| Sbjct 3307225 TGCCTTTTTATTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAA 3307166 Query 39838 TGTTTCTATAGCATTAAAGAGATAAT-GTTTTTCATCACTATCTTTAACATATGTATCTA 39896 |||| || || ||||| ||| | | | || ||| ||| || || || ||||| | Sbjct 3307165 CGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTATC-GGATCCTTGACGTAGGTATCAA 3307107 Query 39897 TTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAAC 39956 | | ||| ||||| || ||||| |||||||| | || | || | ||| ||||||| Sbjct 3307106 TCAGAAGAGAGTACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAAC 3307047 Query 39957 ATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTA 40016 | | || || | |||||| ||||| |||||| | | | ||||||||| || | Sbjct 3307046 AACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGA 3306987 Query 40017 TTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTG 40076 | |||||||| || || || || ||||| |||| ||| || | || | Sbjct 3306986 TGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCAT 3306927 Query 40077 TCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACG 40136 | | | | ||||||| ||| ||| || | || ||| ||||| ||| ||||||| || | Sbjct 3306926 TAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAG 3306867 Query 40137 ACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAA 40196 | || | || || ||||| | | ||| |||||| | ||||| || || | | ||| | Sbjct 3306866 AGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGA 3306807 Query 40197 ATCTATTTGGATTTTTTGCAAGGATGGGTTCCA 40229 |||| ||||| |||| || ||||||| Sbjct 3306806 ATCTTCGGGGATTAGGAACAAGTATAGGTTCCA 3306774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686861343188280