Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5 143 2e-29 >seq5 Length=4770536 Score = 143 bits (158), Expect = 2e-29 Identities = 395/593 (67%), Gaps = 13/593 (2%) Strand=Plus/Plus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || || || ||| | || || ||||| ||||| || ||| | | ||||| ||||| Sbjct 3306803 AGATTCGTTGTGATGCCCATCCAATACCATGATATTTGGGAGTTCTACAAGAAAGCGGTT 3306862 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG-ATTGC 43815 || || || ||||||| || ||||||||||| | || || | | | ||| | | Sbjct 3306863 GCCTCTTTCTGGACAGTTGAGGAAGTTGATTTAGCGAAGGATCTCACTGACTGGGAAAGT 3306922 Query 43816 ATTAAA-ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 |||| | | || || || || || | || ||||| || || || || || | Sbjct 3306923 CTTAATGATGGCGAGCGTCAC--TTCATTTCGTATGTCTTGGCTTTCTTCGCGGCCAGTG 3306980 Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA-GAAGTTCAATTACCAGAA 43933 | || || || ||||||||| | | | ||| | || || || ||| | || || Sbjct 3306981 ATGGCATCGTTAATGAAAATCTAACTT-TGAATTTTTGTAACGAGGTCCAAATTCCCGAG 3307039 Query 43934 GCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGT 43993 || || ||||||||||| | ||| | || | ||||| |||||||| || |||||| | Sbjct 3307040 GCTCGTTGTTTTTATGGAATGCAAGTCGCTGTGGAAAACATTCATTCTGAGATGTACTCT 3307099 Query 43994 CTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGAT-TGTTTAATGCGAT 44052 |||||||| ||||| ||| |||| ||| | || | || | | ||||||| || || Sbjct 3307100 CTTCTGATTGATACCTACGTCAAGGATCCGATAGA-ACGCGACTTTCTGTTTAACGCCAT 3307158 Query 44053 AGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATT 44108 |||| | || || | || | || || || ||||| |||| ||||| ||| Sbjct 3307159 TCAAACGTTGCCGTGTG-TTGCTAAGAAGGCCGATTGGGCGCTTAGGTGGATTGCGAATA 3307217 Query 44109 CAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTT 44168 ||| | | | | || || || || ||||| || | | | |||||| | ||||||| Sbjct 3307218 AAAAGGCACCGTACGCGGAGCGTCTGGTGGCGTTCGCTGCTATCGAAGGCGTATTCTTTT 3307277 Query 44169 CAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGT 44228 | || || ||||| |||| || ||| | ||||| || ||| | |||||||| | || | Sbjct 3307278 CTGGTTCATTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCACCT 3307337 Query 44229 TTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || || ||| | || ||||| ||||||||| | || |||||||| ||| Sbjct 3307338 TTAGTAACGAGCTGATCAGTCGAGATGAAGGCCTCCACACGGATTTTGCATGC 3307390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397429227239635