Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq137 116 3e-21 seq9 82.4 6e-11 >seq137 Length=909340 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| | ||| || || || ||||| ||||| || | |||| ||||||| | ||| Sbjct 668265 ATGAAGCGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCCAACTG 668324 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 ||||| ||| |||| | |||||||||||| ||||| | ||||| ||||| |||||| Sbjct 668325 CTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCCCTCCTTATCTTGGATCTT 668384 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 || | | | || | | || ||| |||||||||||| ||||||| ||||| || Sbjct 668385 CGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATAGTCTTGCCGGT 668444 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || |||||||| ||||| Sbjct 668445 TAGAGTCTTGACAAAGATCTGCAT 668468 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| |||| ||||| || | ||| || || || ||||| ||||||||| Sbjct 675298 CCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAA 675239 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| | |||||| || || | || | |||||| || || || || Sbjct 675238 AGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGG 675179 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||||||| || |||||| |||| | || | | || | | ||||| Sbjct 675178 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 675119 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||| || || || || || ||||||||||| ||||| Sbjct 675118 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATCTGCAT 675072 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | |||| || | ||| || || || ||||| ||||||||| Sbjct 667556 TGCCACCACGCAGACGAAGCACCAGGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGG 667615 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | ||||| | |||||| || || | || | |||||| || || || | Sbjct 667616 AAAGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTG 667675 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||||||| || |||||| |||| | || | | || | | |||| Sbjct 667676 GGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAA 667735 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || |||| || || || || || |||||||||||||||||| Sbjct 667736 CCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCATA 667785 >seq9 Length=3474131 Score = 82.4 bits (90), Expect = 6e-11 Identities = 164/242 (68%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 27007 TTTCA-TAATTATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGA 27065 ||||| || || ||||||| || | | | || | ||| | || || || |||||| Sbjct 2738501 TTTCAGTACTTCATGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGA 2738442 Query 27066 ATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGC 27125 ||||| || || | | ||| |||| || | ||| ||||||||| | || || || Sbjct 2738441 ATATTATAATCAGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGT 2738382 Query 27126 TGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTG 27185 |||||||| || || | |||||||| || ||| || ||| | | | || | | Sbjct 2738381 TGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAA 2738322 Query 27186 TCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGC 27245 || | | ||||| || || ||||| | ||| || || ||||| || ||||| |||||| Sbjct 2738321 TCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGC 2738262 Query 27246 AT 27247 || Sbjct 2738261 AT 2738260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424905776286024