Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 1e-14 seq14 84.2 3e-11 >seq5 Length=4770536 Score = 95.1 bits (104), Expect = 1e-14 Identities = 171/246 (70%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 || ||| | ||||| ||||| | |||||| || ||||| || |||||||| | | | Sbjct 3307145 CTGTTTAACGCCATTCAAACGTTGCCGTGTGTTGCTAAGAAGGCCGATTGGGCGCTTAGG 3307204 Query 94774 TGGTTTG---ATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 94830 ||| ||| ||| |||| | | | | || ||||| || | || || || | | Sbjct 3307205 TGGATTGCGAATAAAAAGGCACCGTAC---GCGGAGCGTCTGGTGGCGTTCGCTGCTATC 3307261 Query 94831 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCT 94889 || || | ||||| |||||||| || ||| | || | |||||||||||||| ||||| Sbjct 3307262 GAAGGCGTATTCTTTTCTGGTTCATT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCT 3307320 Query 94890 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGA 94949 |||||| || ||| ||| |||||||| ||| ||| || || || |||||| || Sbjct 3307321 CATGCCTGGCCTCACCTTTAGTAACGAGCTGATCAGTCGAGATGAAGGCCTCCACACGGA 3307380 Query 94950 GTTTGC 94955 ||||| Sbjct 3307381 TTTTGC 3307386 >seq14 Length=3024391 Score = 84.2 bits (92), Expect = 3e-11 Identities = 175/256 (68%), Gaps = 6/256 (2%) Strand=Plus/Plus Query 169265 TGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGT-GTGAC 169323 || ||||||| ||||| |||||| ||| | ||| || ||| ||| ||| | Sbjct 1591446 TGCAGACCCAGAATCTTAATGAGATTGTTAATCTCAGCATTCTCCATGATCTGCCGTGTC 1591505 Query 169324 AGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACG 169383 ||| | || |||||||| || || || ||||||||||| || ||| | ||||| Sbjct 1591506 GGAG-CTTCACGAACATTGAGCAGTTTACCGCGCAGAGGGAAGACGCCATAGCGGTCACG 1591564 Query 169384 ACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGAT 169443 ||||| || |||||| || || || |||| ||| |||||||| ||||| || | ||| Sbjct 1591565 TCCAACCACTCCGAGACCGGCCACGGCAAGAGACTTGGCCGAGTCGCCCTCAGTAAGGAT 1591624 Query 169444 GAGCGTACATT--TTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGA 169501 ||| || || | | | || | | || || || | ||| ||||| |||| || ||| Sbjct 1591625 GAGGGTGCAGTGCTGCGAGTTCCT--TGTTCCTGCATCGTTGGCATCGTCCAGCTTTGGA 1591682 Query 169502 ATACCAGTAATTTTGG 169517 || || | | ||||| Sbjct 1591683 ATCCCCTTTAATTTGG 1591698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583220503969480