Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5 127 2e-24 >seq5 Length=4770536 Score = 127 bits (140), Expect = 2e-24 Identities = 373/566 (66%), Gaps = 13/566 (2%) Strand=Plus/Plus Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 |||| ||| | |||| | || ||||||||| | | || |||||| | || ||||| Sbjct 3306827 TACCATGATATTTGGGAGTTCTACAAGAAAGCGGTTGCCTCTTTCTGGACAGTTGAGGAA 3306886 Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTC 59693 |||| | || || || | || ||||| | || ||| | | ||||| || ||| Sbjct 3306887 GTTGATTTAGCGAAGGATCTCACTGACTGGGAAAGTCTTAATGATGGCGAGCGTCACTTC 3306946 Query 59694 ATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGAC 59753 || | ||| |||| ||||||||||| |||||||| || || | |||||| || Sbjct 3306947 ATTTCGTATGTCTTGGCTTTCTTCGCGGCCAGTGATGGCATCGTTAATGAAAATCTAACT 3307006 Query 59754 ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTAT--CAGT 59811 |||| |||| || || ||||| ||| ||||||| || | || || | | || ||| Sbjct 3307007 TTGAATTTTTGTAACGAGGTCCAAATTCCCGAGGCTCGTTGTTTTTATG-GAATGCAAGT 3307065 Query 59812 CGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGG 59871 || | || || || || |||| |||||| || |||| |||| | ||||||| Sbjct 3307066 CGCT-GTGGAAAACATTCATTCTGAGATGTACTCTCTTCTGATTGATACCTACGTCAAGG 3307124 Query 59872 ATCCGGAAGAGAAGGC--TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACA 59929 ||||| | |||| || |||||| ||||| | |||| || ||| | Sbjct 3307125 ATCCG--ATAGAACGCGACTTTCTGTTTAACGCCATTCAAACGTTGCCGTGTGTTGCTAA 3307182 Query 59930 AAAAGCAGAATGGGCCATGCAGTGGAT---GAGTCCTGGAGCATCATTTGCACAACGTCT 59986 || || || ||||| | |||||| || | ||| | | || | ||||| Sbjct 3307183 GAAGGCCGATTGGGCGCTTAGGTGGATTGCGAATAAAAAGGCACCGTACGCGGAGCGTCT 3307242 Query 59987 CATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCT 60045 | || || || ||| | ||||| | ||||| ||||| || || | | || |||| Sbjct 3307243 GGTGGCGTTCGC-TGCTATCGAAGGCGTATTCTTTTCTGGTTCATTTGCTTCCATCTTCT 3307301 Query 60046 GGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGG 60105 ||||||| |||||||| |||||||| ||||| | || ||||||||||| || | Sbjct 3307302 GGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCACCTTTAGTAACGAGCTGATCAGTCGAG 3307361 Query 60106 ACGAGGGCCTCCATCAGGAGTTTGCA 60131 | || |||||||| ||| |||||| Sbjct 3307362 ATGAAGGCCTCCACACGGATTTTGCA 3307387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548486903792880