Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5 143 3e-29 seq8 140 4e-28 seq14 86.0 7e-12 >seq5 Length=4770536 Score = 143 bits (158), Expect = 3e-29 Identities = 370/556 (67%), Gaps = 11/556 (2%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||||||||||| || |||| || || ||| | ||||||||||| || |||||||| Sbjct 3307369 GCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTT 3307310 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||| | ||| ||||||| | || |||||| ||||| | |||||||| | || || Sbjct 3307309 CTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAATACGCCTTCGATAGCAGCGAA 3307250 Query 74888 GGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC---ATCCAAGTCTGAGCCCATTC 74944 || || || || | |||| ||||||| | | || ||||| | | ||||| || Sbjct 3307249 CGCCACCAGACGCTCCGCGTACGGTGCCTTTTTATTCGCAATCCACCTAAGCGCCCAATC 3307190 Query 74945 AGCTTTTCGTTTGACCGCAGGGACA-GTATCGATCGCTTGGAAGAGGC--TTGCCTTCTC 75001 || || | | | | || || | || | || || | || || | || |||| Sbjct 3307189 GGCCTT-CTTAGCAACACACGGCAACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTA 3307131 Query 75002 TTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTC 75061 | |||||||||||| | ||||||| ||| |||||| |||| |||||||| | | Sbjct 3307130 TC--GGATCCTTGACGTAGGTATCAATCAGAAGAGAGTACATCTCAGAATGAAT-GTTTT 3307074 Query 75062 GTTGAACGACTGGTA-CGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAA 75120 | ||||| | | | || ||| | || ||||| | ||| || || || || ||| Sbjct 3307073 CCACAGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAATTTGGACCTCGTTACAAA 3307014 Query 75121 AATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCA 75180 |||||| | ||| || | |||||||| || ||| ||||| ||||||| || Sbjct 3307013 AATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCCGCGAAGAAAGCCAAGACAT 3306954 Query 75181 TTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCA 75240 || ||||| ||||| | ||| | || | ||||| || | || ||| ||| | Sbjct 3306953 ACGAAATGAAGTGACGCTCGCCATCATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTA 3306894 Query 75241 AATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGT 75300 |||||| ||||| || ||||||||| ||| ||| || ||||| || ||| | | Sbjct 3306893 AATCAACTTCCTCAACTGTCCAGAAAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATAT 3306834 Query 75301 CAGGGTAATTGATTGG 75316 || |||| | ||| || Sbjct 3306833 CATGGTATTGGATGGG 3306818 >seq8 Length=2505178 Score = 140 bits (154), Expect = 4e-28 Identities = 354/530 (67%), Gaps = 10/530 (2%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACAC 53232 |||| ||||||||| | || ||||||||| | | ||||| || ||||| || | || Sbjct 602378 GAGAGGCCTCAGTACATGTTTATGCGCGTCTCAATAGGTATTCATGGTGAAGATGTGGAC 602437 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 || || |||||| ||| | ||||| |||||| || | |||||| | || || Sbjct 602438 GC-TGCTATTGAGACCTACAATCTAATGTCTGAAAAGTGGTTGATTCACGCCTCACCCAC 602496 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 || || || ||||| ||| | ||||||||||||| ||||| || || | | ||||| Sbjct 602497 TCTTTTTAATGCTGGGACGCCTTACCCTCAGATGTCCAGCTGTTTTTTGCTTACAATGAA 602556 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 || ||| ||||| || || || || |||||||| | ||||| | ||||| || | Sbjct 602557 AGACGACAGTATCGAGGGTATATATGACACGCTCAAACAATGTGCACTGATCTCGAAAAG 602616 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAA--CGGCACAC--CAATCA 53468 ||||||| |||||| | || || || || | | | |||| | | || ||| Sbjct 602617 CGCGGGTGGGATCGGTCT-CAATGTTC--AC-TGCATCCGAAGCAAGAATACGTTTATCG 602672 Query 53469 AGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGG 53528 || || || || | || |||| | || || ||||| || |||||||||| ||| | Sbjct 602673 CTGGAACTAATGGGGAGTCCAATGGTCTTGTACCGATGCTTCGGGTCTTCAACAGCACCG 602732 Query 53529 CCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGC 53588 | || || ||| | ||||| || || || || | || |||||||| ||||| | Sbjct 602733 CTCGTTATGTCGATCAGGGCGGCAACAAACGACCCGGTGCCTTTGCCATCTATCTCGAAC 602792 Query 53589 CGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGA 53648 | ||||| | || | || ||||| | ||| | || ||| || | ||||| | Sbjct 602793 CATGGCATCCGGATGTACTGCAGTTTGTGGAGTTACGGAAGAACACTGGCGCTGAAGAAA 602852 Query 53649 TGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 | ||| || || || || || || |||||||| || || |||||| Sbjct 602853 TTCGCGCTCGGGATCTCTTCCTCGCACTTTGGATTCCCGATCTATTCATG 602902 >seq14 Length=3024391 Score = 86.0 bits (94), Expect = 7e-12 Identities = 148/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 117300 GGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGA 117359 |||| |||||||| ||||| | || | |||||||||||| || |||||||| || | Sbjct 1587563 GGCG-GTGAAAATATAACGGGCAGAAGCGGAATCCTTGCCACCGGCGAGACGCGTTCCAA 1587621 Query 117360 ATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGT 117419 | || ||| ||| ||| || || |||||||||| || ||||||| ||||||| Sbjct 1587622 ACTGACCATAGGGCATCAACAGATTGAGGTTGTTGGAACCTACAAAGTCCTGAGCCAGCC 1587681 Query 117420 TGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGT 117479 | || || || |||| | | || |||||||| || | | | ||| |||||| Sbjct 1587682 CAATGATGGTGCCCATGAGGGACACTTCGCCATGGTGGTAGGAGGACATCTCTGCCACG- 1587740 Query 117480 AGC-CCGC-CAGCTGAGCCACCTTCATGTC 117507 || |||| | |||||||||||| || || Sbjct 1587741 -GCACCGCATAACTGAGCCACCTTAATCTC 1587769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547178194214600