Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq137 114 8e-21 seq9 104 1e-17 >seq137 Length=909340 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | ||| | ||| || || ||||||||||||||| ||||| || Sbjct 668469 GCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGA 668528 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| | ||| ||||| ||||| || |||||||| ||||| || || Sbjct 668529 AAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGG 668588 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | || ||||| ||| |||||| |||| || | ||| | || | || | Sbjct 668589 AATGCCTTCCTTATCTTGGATCTTCGCCTTTA-CGTTCTCAATCGAATCGCTGGGTTCAA 668647 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||||| || || ||||||| || || ||||||||||||||| Sbjct 668648 CTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCATG 668697 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | ||| | ||| || || ||||||||||||||| ||||| || Sbjct 668697 GCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGA 668756 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| | ||| ||||| ||||| || |||||||| ||||| || || Sbjct 668757 AAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGG 668816 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | || ||||| ||| |||||| |||| || | ||| | || | || | Sbjct 668817 AATGCCTTCCTTATCTTGGATCTTCGCCTTTA-CGTTCTCAATCGAATCGCTGGGTTCAA 668875 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||||| || || ||||||| || || ||||||||||||||| Sbjct 668876 CTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCATG 668925 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | ||| | ||||| || |||||||||||||||||| || || Sbjct 668925 GCCACCACGAAGTCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGA 668984 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| | || || || ||||| |||| || || |||||||| || Sbjct 668985 CAGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAAGATTAGGCGTTGCTGGTCCGGTGG 669044 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| || | || || | |||||||| | |||| Sbjct 669045 AATGCCCTCCTTGTCT-TGAATCTTCGCCTTCACATTCTCGATTGTGTCGCTGGGTTCCA 669103 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || || || ||||||| |||||||||||||| ||||| Sbjct 669104 CCTCCAGCGTAATTGTCTTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 669152 Score = 105 bits (116), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||| | ||| || || |||||| |||||||| ||||| ||||| || || Sbjct 668251 AGTCGAAGCACGAGATGAAGCGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGA 668310 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | || ||||| || || || ||||||||||| || ||||| | |||||| Sbjct 668311 CCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCCCTCC 668370 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| |||| || | || ||| | ||| | || | || ||||| | || Sbjct 668371 TTATCTTGGATC-TTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGT 668429 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| || || ||||||| || || ||||| ||||||||| Sbjct 668430 TATAGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCATG 668469 Score = 91.5 bits (100), Expect = 9e-14 Identities = 167/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 34467 TATCCAATCGTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAAT 34526 ||| ||||| ||| || | |||||| | ||| | || || ||| |||||||||||| Sbjct 657338 TATGCAATCA--GCCTCCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGAAT 657395 Query 34527 GTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTG 34586 ||| || || || | || || | ||||| | || || || ||||| || | || || Sbjct 657396 GTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGGCGTTG 657455 Query 34587 TTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT 34645 || ||||| || | |||||||||||| ||| |||| || || | || | || Sbjct 657456 CTGATCCGGTGGAATGCCCTCCTTGTCT-TGAATCTTTGCCTTCACATTCTCTATCGAGT 657514 Query 34646 CTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA 34705 | | |||||| |||| || || ||||| ||||||| || ||||| || ||||||| Sbjct 657515 CACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCA 657574 Query 34706 T 34706 | Sbjct 657575 T 657575 Score = 91.5 bits (100), Expect = 9e-14 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 ||||| |||||| || || || |||||| |||||||| || || || | || || | Sbjct 668025 ACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGACC 668084 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 || || | || || || ||||| || || || || |||||||| || | |||||||| Sbjct 668085 ATCCTCCAACTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCCGGTGGGATGCCCTCCTT 668144 Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTT 34668 ||| |||| || | || ||| | || | ||| ||| |||||| |||| ||| Sbjct 668145 GTCCTGGATC-TTCGCCTTCACGTTCTCTATCGAGTCACTCG-GCTCCACCTCCAAGGTG 668202 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | ||||| ||||| |||||||| Sbjct 668203 ATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 668240 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 ||||| |||||| || || || |||||| |||||||| || || || | || || | Sbjct 667341 ACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGACC 667400 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 || || | || || || ||||| || || || || |||||||| || | |||||||| Sbjct 667401 ATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCCGGTGGGATGCCCTCCTT 667460 Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTT 34668 ||| |||| || | || ||| | || | ||| ||| |||||| |||| || Sbjct 667461 GTCCTGGATC-TTCGCCTTCACGTTCTCTATCGAGTCACTCG-GCTCCACCTCCAACGTA 667518 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | |||||||||||| || |||||| Sbjct 667519 ATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCATG 667557 Score = 82.4 bits (90), Expect = 5e-11 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 ||||| |||||| || || || |||||| |||||||| || || || | || || | Sbjct 675515 ACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGACC 675456 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 || || | || || || ||||| || || || || ||||| || || | |||||||| Sbjct 675455 ATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGGATGCCCTCCTT 675396 Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTT 34668 ||| |||| || | || ||| | || | ||| ||| |||||| |||| || Sbjct 675395 GTCCTGGATC-TTCGCCTTCACGTTCTCTATCGAGTCACTCG-GCTCCACCTCCAACGTA 675338 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | |||||||||||| || ||||| Sbjct 675337 ATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 675300 >seq9 Length=3474131 Score = 104 bits (114), Expect = 1e-17 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| || |||||||||||| |||||||| || || || ||| |||| || | || Sbjct 2738463 ATGGAGTGTCGACTCCTTTTGAATATTATAATCAGAGAGAGTCCGCCCGTCCTCCAACTG 2738404 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 |||||||| || || | || ||||| || || || | |||||| |||||| ||| || Sbjct 2738403 CTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGAT-TT 2738345 Query 34623 TTGTTTTAACGATAAAATTG---TGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACC 34679 ||| ||| ||| | | || | ||| | ||| || || | |||||| ||||| || Sbjct 2738344 TTGCTTTTACGTTCTCAATGGAATCACTTGG--CTCAACCTCAAGGGTTATGGTTTTTCC 2738287 Query 34680 GGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || |||||||| ||||| Sbjct 2738286 AGTGAGAGTCTTAACAAAAATTTGCAT 2738260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314708399715791