Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq137 165 7e-36 seq383 149 5e-31 seq9 131 1e-25 >seq137 Length=909340 Score = 165 bits (182), Expect = 7e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || ||||| ||| |||| || || || || || || Sbjct 675071 CATGCAGATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAG 675130 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || |||||||||| || || || |||||||||||||| || || ||||| || || Sbjct 675131 TGATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCAGACCA 675190 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | || |||||||| |||||||| || || ||||||| ||||| Sbjct 675191 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAA 675250 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| || | || ||||| |||||||||| ||||| || Sbjct 675251 CATTCAGAAGGAGTCAACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGTAT 675301 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||||| ||||||||| |||| || || ||||| ||||| Sbjct 668469 CATGCAGATCTTTGTCAAGACTCTAACCGGCAAGACTATAACGCTAGAAGTTGAACCCAG 668410 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || |||||||||| || || || || ||||| || || ||||| || || ||||| Sbjct 668409 TGATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAGGGCATTCCGCCAGATCA 668350 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| || | ||| || || || ||||||||| || || |||| |||||||| Sbjct 668349 ACAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTCGCACTCTTTCTGATTACAA 668290 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| || | ||| | || | || | || ||||| || Sbjct 668289 CATTCAGAAGGAGTCAACGCTTCATCTCGTGCTTCGACTCCGTGGTGGTAT 668239 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||||| ||||||||| | || || || ||||| ||||| Sbjct 668697 CATGCAGATTTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAG 668638 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||||||||| || || || || ||||| || |||||||| ||||| || || Sbjct 668637 CGATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAAGGCATTCCACCAGACCA 668578 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | || || || ||||||||||| | || |||| |||||||| Sbjct 668577 GCAGCGTTTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCTGATTACAA 668518 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||| || | ||| | || | || | || |||||||| Sbjct 668517 CATTCAAAAGGAGTCAACGCTTCATCTTGTGCTACGACTTCGTGGTGGCAT 668467 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||||| ||||||||| | || || || ||||| ||||| Sbjct 668925 CATGCAGATTTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAG 668866 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||||||||| || || || || ||||| || |||||||| ||||| || || Sbjct 668865 CGATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAAGGCATTCCACCAGACCA 668806 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | || || || ||||||||||| | || |||| |||||||| Sbjct 668805 GCAGCGTTTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCTGATTACAA 668746 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||| || | ||| | || | || | || |||||||| Sbjct 668745 CATTCAAAAGGAGTCAACGCTTCATCTTGTGCTACGACTTCGTGGTGGCAT 668695 Score = 152 bits (168), Expect = 4e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| || ||||||||| | || || | || ||||| ||| Sbjct 668240 ATGCAGATATTTGTTAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCGAGT 668181 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| |||| || || || || || ||||| || ||||| ||||| || || Sbjct 668180 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 668121 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || || || || | || || || || ||||| || || || |||| ||||| ||||| Sbjct 668120 CAACGCTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGT-CGCACGTTGTCCGACTACAA 668062 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||||||||| | || ||||| |||||||||| |||||||| Sbjct 668061 CATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGCAT 668011 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || ||||| ||| |||| || || || || || || Sbjct 667784 ATGCAAATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 667725 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||||||||| || || || |||||||||||||| || || ||||| || || Sbjct 667724 GATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAG 667665 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || |||||||| |||||||| || || ||||||| |||||| Sbjct 667664 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAAC 667605 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || | || |||| | ||| |||| |||||||| Sbjct 667604 ATTCAGAAGGAGTCAACGCTTCACCTGGTGCTTCGTCTGCGTGGTGGCAT 667555 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| ||||| ||||| || ||| | ||||| | || ||||| ||| Sbjct 675300 ATGCAAATATTTGTGAAAACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 675359 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| |||| || || || || || ||||| || ||||| ||||| || || Sbjct 675360 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCAGACCAG 675419 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || || || || | || || || || ||||| || || || |||| ||||| ||||| Sbjct 675420 CAACGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGT-CGCACGTTGTCCGACTACAA 675478 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||||||||| | || ||||| |||||||||| ||||| || Sbjct 675479 CATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGTAT 675529 Score = 141 bits (156), Expect = 8e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| |||||||| ||||| ||||| || ||| | ||||| | || ||||| ||| Sbjct 667557 CATGCAAATATTTGTGAAAACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAG 667498 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| |||| || || || || || ||||| || ||||| ||||| || || Sbjct 667497 TGACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 667438 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACA 27165 || || || || | || || || || ||||| || || || |||| ||||| |||| Sbjct 667437 GCAACGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGT-CGCACGTTGTCCGACTACA 667379 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| |||||||| || | || ||||| |||||||||| ||||| || Sbjct 667378 ACATTCAGAAGGAGTCAACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGTAT 667327 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| ||||| || || || ||||| || ||| ||||||| || ||||||||||| Sbjct 668013 CATGCAAATATTCGTGAAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAG 667954 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| || || || ||||| || || || || || || || ||||| Sbjct 667953 CGACACAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCGCCTGATCA 667894 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | || ||||| || ||||| || || || | || || ||||| Sbjct 667893 GCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACTTTATCTGACTACAA 667834 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||| |||||| | ||| | || | ||| |||| ||||| || Sbjct 667833 CATTCAGAAGGAATCGACCCTCCATCTCGTGCTTCGTCTGCGTGGTGGTAT 667783 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| ||||||||| | ||||| || || |||||||| | Sbjct 669152 ATGCAAATTTTTGTGAAAACTCTAACCGGCAAGACAATTACGCTGGAGGTGGAACCCAGC 669093 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || ||||||||||| || ||||| ||||| || || Sbjct 669092 GACACAATCGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAG 669033 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || |||| | || || || || |||||||| || ||| | || || || ||| Sbjct 669032 CAACGCCTAATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTATAAC 668973 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| ||| | || | || | || | || |||||||| Sbjct 668972 ATTCAAAAGGAGTCAACCCTCCACCTTGTGCTCCGACTTCGTGGTGGCAT 668923 Score = 132 bits (146), Expect = 4e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| |||| || || || || || ||| Sbjct 667328 ATGCAGATCTTCGTGAAGACGCTGACTGGGAAGACTATCACCCTCGAGGTTGAGCCGAGT 667269 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||||||||| || || ||| ||||||||||| || ||||| || || || ||| Sbjct 667268 GATTCGATTGAGAACGTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCCCCAGACCAA 667209 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| ||||| || |||||||| || || | ||||| |||||| Sbjct 667208 CAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAAC 667149 Query 27168 ATTCAAAAGGAGTCGACC 27185 ||||| ||||| |||||| Sbjct 667148 ATTCAGAAGGAATCGACC 667131 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| |||||||| | || || || || ||||| || Sbjct 657575 ATGCAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGAGCCCAGT 657516 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| |||| || || ||| ||||||||||| || ||||| ||||| ||||| Sbjct 657515 GACTCGATAGAGAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCACCGGATCAG 657456 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | || || || || |||||||| || ||| | || || |||||| Sbjct 657455 CAACGCCTGATCTTTGCAGGAAAGCAGTTGGAAGATGGTCGCACCTTGTCTGACTACAAC 657396 Query 27168 ATTCAAAAGGAGTCGACC 27185 |||||||||||||| ||| Sbjct 657395 ATTCAAAAGGAGTCCACC 657378 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| |||| || || || || || || Sbjct 675528 ATGCAGATCTTCGTGAAGACGCTGACTGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 675587 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| |||| || || ||| || || ||||| || ||||| || || || ||| Sbjct 675588 GACTCGATAGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAA 675647 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | || ||||| || |||||||| || || | ||||| |||||| Sbjct 675648 CAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAAC 675707 Query 27168 ATTCAAAAGGAGTCGACC 27185 ||||| ||||| |||||| Sbjct 675708 ATTCAGAAGGAATCGACC 675725 >seq383 Length=735259 Score = 149 bits (164), Expect = 5e-31 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| ||||| |||||||| |||||||| |||| |||||||| || || || Sbjct 365707 CGGCATGCAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAGCC 365766 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||||| || ||||||| || || || ||||||||||| || || || ||||| || Sbjct 365767 CTCCGATTCTATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAGGGGATTCCACCAGA 365826 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 ||||||||| | || | || ||||| |||||||| || | || | || ||||| Sbjct 365827 CCAACAGCGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTA 365886 Query 27164 CAACATTCAAAAGGAGTCGACC 27185 ||| ||||| |||||||| ||| Sbjct 365887 CAATATTCAGAAGGAGTCAACC 365908 >seq9 Length=3474131 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || || || | || || ||||| || || || Sbjct 2738260 ATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAGT 2738319 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||||| || ||| |||||| ||||||||||| || |||||||| |||||| Sbjct 2738320 GATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCAA 2738379 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | |||||| || || ||||| ||| | ||| | || ||||| || Sbjct 2738380 CAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCTGATTATAAT 2738439 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||||||||||||||||| | ||| | ||| Sbjct 2738440 ATTCAAAAGGAGTCGACACTCCATCTTGTT 2738469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434888352575040