Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq137 93.3 3e-14 >seq137 Length=909340 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| || |||||||| ||||| | || || || | Sbjct 667556 ATGCAAATATTTGTGAAAACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 667497 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | || || || || || ||||| || || | || ||| | Sbjct 667496 GACTCGATAGAGAAC--GTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACC 667439 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||||||||| || ||||| ||||| || ||||| || | |||| |||||||| |||| Sbjct 667438 AGCAACGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACA 667379 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || ||| || | || ||||| ||||||||||||| || Sbjct 667378 ACATTCAGAAGGAGTCAACGCTTCACTTGGTGCTGCGTTTGCGTGGTGG 667330 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| || |||||||| ||||| | || || || | Sbjct 675300 ATGCAAATATTTGTGAAAACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 675359 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | || || || || || ||||| || || | || || | Sbjct 675360 GACTCGATAGAGAAC--GTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCAGACC 675417 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||||||||| || ||||| ||||| || ||||| || | |||| |||||||| |||| Sbjct 675418 AGCAACGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACA 675477 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || ||| || | || ||||| ||||||||||||| || Sbjct 675478 ACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGG 675526 Score = 86.0 bits (94), Expect = 4e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| |||||||| || || ||||| ||||| || ||||| || | |||| |||||||| Sbjct 668127 GGACCAGCAACGCTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGA 668068 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || || ||| || | || ||||| ||||||||||||| ||| Sbjct 668067 CTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 668013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355838428997529