Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq137 95.1 1e-14 seq9 91.5 1e-13 >seq137 Length=909340 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 39067 AAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGT 39126 || || | |||||| || ||||| ||| || || || || || |||| | || || Sbjct 667339 AAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGA 667398 Query 39127 TCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTC 39185 | || || | ||| || || ||||| || | || |||||||| |||||| | || ||| Sbjct 667399 CCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCCGGTGGG-ATGCCCTC 667457 Query 39186 TTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGT 39245 |||||| ||| ||| || | || | | || || |||| |||||| |||| ||| Sbjct 667458 CTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGT 667517 Query 39246 GATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || ||||||||||| ||||| |||||||| Sbjct 667518 AATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 667556 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || ||||| ||| || || || || || |||| ||| || || | || || Sbjct 667575 CACCAGGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCATCTTC 667634 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 | ||||||||| ||||| || | |||||||||||| |||||| | | ||||||||| Sbjct 667635 CAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGG-ATACCCTCTTTGTCTT 667693 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || || || | || | | || ||| || | ||| || || | |||||| | | Sbjct 667694 GAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCT 667753 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || ||||| || |||||||||||||| Sbjct 667754 TCCCGGTAAGCGTCTTCACAAAGATTTGCAT 667784 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 39067 AAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGT 39126 || || | |||||| || ||||| ||| || || || || || |||| ||| || || Sbjct 675289 AAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGA 675230 Query 39127 TCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTC 39185 | || || | ||||||||| ||||| || | |||||||||||| |||||| | | ||| Sbjct 675229 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGG-ATACCCTC 675171 Query 39186 TTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGT 39245 |||||| || || || | || | | || ||| || | ||| || || | || Sbjct 675170 TTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGT 675111 Query 39246 GATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| | || || || ||||| || |||||||| ||||| Sbjct 675110 GATAGTCTTCCCGGTAAGCGTCTTCACAAAGATCTGCAT 675072 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 39067 AAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGT 39126 || || | |||||| || ||||| ||| || || || || || |||| | || || Sbjct 675517 AAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGA 675458 Query 39127 TCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTC 39185 | || || | ||| || || ||||| || | || |||||||| |||||| | || ||| Sbjct 675457 CCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGG-ATGCCCTC 675399 Query 39186 TTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGT 39245 |||||| ||| ||| || | || | | || || |||| |||||| |||| ||| Sbjct 675398 CTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGT 675339 Query 39246 GATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || ||||||||||| ||||| |||||||| Sbjct 675338 AATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 675300 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 39046 AATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATA 39105 ||| | | || ||| || | || || | |||||| || ||||| ||| || || || Sbjct 668002 AATATTTGCATGCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATG 668061 Query 39106 TTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGC 39165 || || |||| | || || | || || | ||| || || ||||| || | || ||| Sbjct 668062 TTGTAGTCGGACAACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAAGCGTTGC 668121 Query 39166 TGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 ||||| |||||| | || ||| |||||| ||| ||| || | || | | || || Sbjct 668122 TGGTCCGGTGGG-ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTC 668180 Query 39225 GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| |||||| |||| ||||| | || || || || ||||||||||| || ||||| Sbjct 668181 ACTCGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 668240 >seq9 Length=3474131 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 39052 TTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAA 39111 |||| |||||||| || | || || | ||| || || ||| ||||| ||||||||| Sbjct 2738492 TTCATGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAA 2738433 Query 39112 TCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCG 39171 || | || || || |||| || | ||| || || || || ||||| || || || || Sbjct 2738432 TCAGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCT 2738373 Query 39172 GTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC 39231 | || | | ||||||||| |||||| ||| | || | | | ||| || | | Sbjct 2738372 GGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCACTTGGC 2738313 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || | || || ||||||| || || || |||||||| |||||||| Sbjct 2738312 TCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCAT 2738260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429516665674151