Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq137 152 1e-31 seq383 113 1e-19 seq9 111 4e-19 >seq137 Length=909340 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || ||||||||||| || || || ||||| | || || || | || || Sbjct 668931 ACGAAGTCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGT 668990 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||||||| || ||||| || ||||| ||||| || ||||| || Sbjct 668991 GCGACCATCTTCCAACTGCTTCCCCGCAAAGATTAGGCGTTGCTGGTCCGGTGGAATGCC 669050 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| ||||| ||||||| ||||| ||||| || |||||| || | Sbjct 669051 CTCCTTGTCTTGAATCTTCGCCTTCACATTCTCGATTGTGTCGCTGGGTTCCACCTCCAG 669110 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || |||||||| || | |||||| | || | |||||| Sbjct 669111 CGTAATTGTCTTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 669152 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || |||||||| || || ||||| || || | ||||| |||| ||| || Sbjct 675749 ACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGT 675690 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| ||||| ||||| | |||||||||||| || ||||| || Sbjct 675689 GCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGAGGAATGCC 675630 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| ||||||||| ||||||| || || | ||| | || || || | Sbjct 675629 CTCCTTGTCCTGGATCTTTGCCTTCACATTCTCTATCGAGTCACTAGGCTCAACCTCGAG 675570 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || |||| || || | ||| | ||||| Sbjct 675569 GGTGATAGTCTTCCCAGTCAGCGTCTTCACGAAGATCTGCAT 675528 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || |||||||| || ||||| || ||||| | ||||| || | ||| || Sbjct 657354 ACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGT 657413 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| || || ||||| || ||||| || || || ||||| || Sbjct 657414 GCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGGCGTTGCTGATCCGGTGGAATGCC 657473 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| |||||| ||||||| || || | ||| || ||||| || | Sbjct 657474 CTCCTTGTCTTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAG 657533 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || ||||| || | ||| || | ||| | |||||| Sbjct 657534 TGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 657576 Score = 131 bits (144), Expect = 4e-25 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || |||||||| || || ||||| || || | ||||| |||| ||| || Sbjct 667107 ACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGT 667166 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| ||||||||||| | |||||||||||| || ||||| || Sbjct 667167 GCGACCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGAATGCC 667226 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCAC 225638 ||||||||||| |||||| |||||| Sbjct 667227 CTCCTTGTCTTGAATCTTTGCCTTCAC 667253 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||| || ||||| || || | ||||| || | ||||| | ||||| Sbjct 667801 AGCACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAAAGTGCGACCATCC 667860 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| ||||| ||||| | || || || || ||||||||||| ||||| || Sbjct 667861 TCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCC 667920 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| || || ||||| | |||||| || | ||| || ||| Sbjct 667921 TGAATCTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGTC 667980 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| || || | ||| | |||||| Sbjct 667981 TTCCCAGTCAGCGTCTTCACGAATATTTGCAT 668012 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || ||||| || || || || || ||||| | |||||||| | | ||| Sbjct 668475 ACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGT 668534 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| ||||| ||||| | || || ||||| || ||||| || Sbjct 668535 GCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCC 668594 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||||||||| ||| || || || | || || ||| || |||| Sbjct 668595 TTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAG 668654 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||| || |||||||| || | ||| || Sbjct 668655 CGTTATGGTCTTGCCGGTTAGAGTCTT 668681 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || ||||| || || || || || ||||| | |||||||| | | ||| Sbjct 668703 ACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGT 668762 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| ||||| ||||| | || || ||||| || ||||| || Sbjct 668763 GCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCC 668822 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||||||||| ||| || || || | || || ||| || |||| Sbjct 668823 TTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAG 668882 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||| || |||||||| || | ||| || Sbjct 668883 CGTTATGGTCTTGCCGGTTAGAGTCTT 668909 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || || || || || || || || || | |||||||| | | ||| Sbjct 668247 ACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGT 668306 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | |||||| |||||||| || | || ||||| || |||||||| || Sbjct 668307 GCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCC 668366 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||||||||| ||| || || || | || || ||| || |||| Sbjct 668367 CTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAG 668426 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||| || |||||||| || | ||| || Sbjct 668427 CGTTATAGTCTTGCCGGTTAGAGTCTT 668453 >seq383 Length=735259 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| || || || || || || | ||||||||| | || | | ||||| Sbjct 365922 AGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCC 365863 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| ||||| || ||||| || |||||||| || ||||| || ||||||||| Sbjct 365862 TCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCT 365803 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| || || | || |||| || || || | ||||| || Sbjct 365802 TGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTT 365743 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| || | |||||| Sbjct 365742 TTGCCGGTAAGAGTTTT 365726 >seq9 Length=3474131 Score = 111 bits (122), Expect = 4e-19 Identities = 111/143 (78%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || ||||| || ||||| ||||| || || || ||||| | ||| ||||| | | ||| Sbjct 2738480 CGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAATCAGAGAGAGTC 2738421 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||| || || | |||||| || ||||||||||| |||||||| || || || || || Sbjct 2738420 CGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCC 2738361 Query 225613 TCCTTGTCTTGGATCTTTTGCTT 225635 || ||||||||||| |||||||| Sbjct 2738360 TCTTTGTCTTGGAT-TTTTGCTT 2738339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192446751275738