Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq5 188 6e-43 >seq5 Length=4770536 Score = 188 bits (208), Expect = 6e-43 Identities = 392/578 (68%), Gaps = 12/578 (2%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || |||||||| || | ||||| |||| || ||||| |||||| ||| || | Sbjct 3307389 CATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGG 3307330 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | ||| | ||| || ||||| || || | |||||||| |||||||||||| Sbjct 3307329 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAAT 3307270 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT- 4726 | |||||| | || || ||||| || | || | || ||| || |||| | || Sbjct 3307269 ACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGG--TGCCTTTTTATTCG 3307212 Query 4727 -AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGT 4785 |||||| | | ||||| | || || || ||| ||||| | || | || |||| Sbjct 3307211 CAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGT 3307152 Query 4786 TAAATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 |||| | | | | || | | || || | | || || || || || || | Sbjct 3307151 TAAACAGAAAGTCGCGTTCT---ATCGGATCCTTGACGTAGGTATCAATCAGAAGAGAGT 3307095 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTG 4902 |||| |||||||| || ||||| | ||| | || | ||| ||||| || | ||| || | Sbjct 3307094 ACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAACAACGAGCCTCGG 3307035 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAG-TTTTCGTTTACTATACCGTCACTG 4961 | ||| || ||||||||||| || | | || ||||| || || || || |||||| Sbjct 3307034 GAATTTGGACCTCGTTACAAAAA-TTCAAAGTTAGATTTTCATTAACGATGCCATCACTG 3306976 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTC 5021 || || || || ||||| |||| || || |||| | ||| || ||||| ||| | Sbjct 3306975 GCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGACTTTCC 3306916 Query 5022 CAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCT 5081 |||| | | ||| || | |||||||||||| ||||| ||||| || || || ||||| Sbjct 3306915 CAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAACCGCT 3306856 Query 5082 TTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 || ||||| | |||||||||| | || || || || Sbjct 3306855 TTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGG 3306818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427020833805491