Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5 257 2e-63 seq8 205 1e-47 >seq5 Length=4770536 Score = 257 bits (284), Expect = 2e-63 Identities = 510/752 (68%), Gaps = 15/752 (2%) Strand=Plus/Minus Query 48011 ACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGT 48070 ||||||||| || ||||| | || || || || ||||||||||| || ||| ||| | Sbjct 3307519 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCCGTAAGAAATTCGCATTCAATACT 3307460 Query 48071 GACAGCATCCACTATTATCGATGTTA----CCGTTTCCTCACTTGGTGGATACAACAAAT 48126 ||| || ||| || ||||| | || ||||| | | || | || | || Sbjct 3307459 GACTGCCTCCCTCAT----GATGTCATAAACCCTTTCCGCCGTAGGCTTGTTCACAATAT 3307404 Query 48127 GTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGT 48186 ||||||| || | ||||||||||| || || |||||||||| ||| || | |||| Sbjct 3307403 GTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGT 3307344 Query 48187 TAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAG 48246 || ||| ||||| || ||||| || ||||| || |||||||| || || | || || | Sbjct 3307343 TACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATG 3307284 Query 48247 ATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG 48306 | ||||||||||||| |||||| | || || || || || | ||| |||| | Sbjct 3307283 AACCAGAAAAGAATACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTG 3307224 Query 48307 C---TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTG 48363 | || || ||||||| | |||||||| |||||||| ||||| |||| | Sbjct 3307223 CCTTTTTATTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACG 3307164 Query 48364 TTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTA 48423 ||| || || ||||| ||||||| ||| | ||| || ||||| ||||| || | Sbjct 3307163 TTTGAATGGCGTTAAACAGAAAGTCGCGTTCTATCGGATCCTTGACGTAGGTATCAATCA 3307104 Query 48424 AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATC 48483 |||| ||||| || || ||||| ||||| | || | || | ||| |||||||| | Sbjct 3307103 GAAGAGAGTACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAACAAC 3307044 Query 48484 TCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC--AGCCAAATTCTCATTTACTAT 48541 || || | || || ||||| ||||||| ||| || | ||| ||||| || || Sbjct 3307043 GAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGAT 3306986 Query 48542 TCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGT 48601 |||||||| || || || || || || |||| ||| || | ||| | | Sbjct 3306985 GCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATT 3306926 Query 48602 CAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGA 48661 || | | ||||||| ||| ||| || | || ||| ||||| ||| ||||||| || || Sbjct 3306925 AAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGA 3306866 Query 48662 TGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 || | ||||| || || | | ||| |||||| ||||||||| || | | ||| || Sbjct 3306865 GGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAA 3306806 Query 48722 TCTATTTGGATTTTTTGCAAGGATAGGTTCCA 48753 ||| ||||| |||| |||||||||| Sbjct 3306805 TCTTCGGGGATTAGGAACAAGTATAGGTTCCA 3306774 >seq8 Length=2505178 Score = 205 bits (226), Expect = 1e-47 Identities = 422/623 (68%), Gaps = 6/623 (1%) Strand=Plus/Minus Query 77916 TATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCAC 77975 || ||| ||| || || || |||||| ||| | | || ||||| |||| ||| | Sbjct 602997 TAAAGCATTTCGAACTCCTCCCCCCAACAGTCAGCAAGACCGGGGCACTCATGGGGGTCC 602938 Query 77976 ATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGA 78035 || || | ||| || | || ||| |||||| ||||| || ||||| || ||||| || Sbjct 602937 ATAAAGGTCCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGT 602878 Query 78036 GCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGA 78095 || | || ||||| || | | | ||||||| || || ||||| | || | | Sbjct 602877 GCGAGGAAGAGATCCCGAGCGCGAATTTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACA 602818 Query 78096 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTA 78155 |||| || | ||| | |||||||||||| ||||| || || | | || |||||||| Sbjct 602817 AACTGCAGTACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTG 602758 Query 78156 TTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 78215 || || |||||||| | ||| | |||||| | || | || | | ||| || | || | Sbjct 602757 TTGCCGCCCTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGA 602698 Query 78216 CCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGC-GCGAAT--ATTACTA 78272 || || || ||||| ||||||| ||| ||| | ||||| || || | | Sbjct 602697 CCATTGGACTCCCCATTAGTTCCAGCGATA-AACGTATTCTTGCTTCGGATGCAGTGAAC 602639 Query 78273 ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCG 78332 || || | || || || || || | || || || || || || |||| | || || Sbjct 602638 ATTGAGA--CCGATCCCACCCGCGCTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCA 602581 Query 78333 TAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 78392 || |||||||| |||||||| || |||| |||| | ||||||||| ||||| ||| | Sbjct 602580 TATATACCCTCGATACTGTCGTCTTTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGG 602521 Query 78393 TGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGT 78452 | | || || |||||||| | || || || || || | ||||| |||||||| | | Sbjct 602520 TAAGGCGTCCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATT 602461 Query 78453 AGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGC 78512 |||||||| || |||||||| | || | || |||||| |||| | || ||| Sbjct 602460 AGATTGTAGGTCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGC 602401 Query 78513 ATCAACATATGCTGAGGTCTTTC 78535 || ||||| | |||||| || || Sbjct 602400 ATAAACATGTACTGAGGCCTCTC 602378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694620807069280