Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5 325 6e-84 seq8 214 3e-50 >seq5 Length=4770536 Score = 325 bits (360), Expect = 6e-84 Identities = 552/794 (70%), Gaps = 17/794 (2%) Strand=Plus/Minus Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 |||| || |||||||| ||||||| ||| | ||||||||| || || || Sbjct 3307560 AGTCGGTCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCATGCCAATAAGA 3307501 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 | ||| || || || ||||||||||| || ||||||| |||| || ||| || Sbjct 3307500 TCGACAGGCAGGGCGTCCGTAAGAAATTCGCATTCAATACTGACTGCCTCCCTCAT---- 3307445 Query 46579 GATGTTA----CTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGC 46634 ||||| | | ||||| | | || | || | ||||||||| || | ||||| Sbjct 3307444 GATGTCATAAACCCTTTCCGCCGTAGGCTTGTTCACAATATGTTTAAAAATGAGGCATGC 3307385 Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694 |||||| || ||||||||||||| ||| || | |||||| ||| ||||| ||||| Sbjct 3307384 AAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCCAGG 3307325 Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754 ||| || |||||||| |||||||| || || | || || || ||||||||||||| ||| Sbjct 3307324 CATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAATACGCC 3307265 Query 46755 TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCCA 46811 ||| | ||| ||||| || || || | ||| |||| || | |||| |||||| Sbjct 3307264 TTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTTTATTCGCAATCCA 3307205 Query 46812 CCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871 ||| | |||||||| ||||| || ||||| |||| |||| || || ||||| || Sbjct 3307204 CCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAACAG 3307145 Query 46872 AAAGtttttttC-ATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTG 46930 ||||| ||| ||| ||| || || || ||||| || | |||| ||||| || | Sbjct 3307144 AAAGTCGCGTTCTATC-GGATCCTTGACGTAGGTATCAATCAGAAGAGAGTACATCTCAG 3307086 Query 46931 AATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTA 46990 ||||||||||||| | ||| | || | ||| |||||||| | || || | ||| || | Sbjct 3307085 AATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAATTTGGA 3307026 Query 46991 CCTCTGTACAAAATCGTTC--AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAA 47048 |||| ||||||| ||| || | ||| ||||| || || |||||||| || || || Sbjct 3307025 CCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCCGCGAA 3306968 Query 47049 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATT 47108 || ||||| |||| ||| || | || | | | || | | ||||||| | Sbjct 3306967 GAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGACTTTCCCAGTCAGT 3306908 Query 47109 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATA 47168 || ||| || | || ||| ||||| ||| |||||||||| || || | ||||| || || Sbjct 3306907 GAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAACCGCTTTCTTGTA 3306848 Query 47169 CATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGC 47228 | | ||| |||||| | |||||||| || | | ||| ||||| ||||| | Sbjct 3306847 GAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCTTCGGGGATTAGGAAC 3306788 Query 47229 AAGTATAGGTTCCA 47242 |||||||||||||| Sbjct 3306787 AAGTATAGGTTCCA 3306774 >seq8 Length=2505178 Score = 214 bits (236), Expect = 3e-50 Identities = 413/607 (68%), Gaps = 2/607 (0%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||| || || || |||||| ||| | | ||| || || |||| || ||| || | Sbjct 602989 TTCGAACTCCTCCCCCCAACAGTCAGCAAGACCGGGGCACTCATGGGGGTCCATAAAGGT 602930 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 |||| || | || ||| ||| || ||||| || ||||| || ||||| || || | || Sbjct 602929 CCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAA 602870 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 ||||| || | | | ||||||| || || ||||| | || | |||| || Sbjct 602869 GAGATCCCGAGCGCGAATTTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAG 602810 Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758 | ||| | |||||||||||| ||||| || || | |||| |||||||| || || || Sbjct 602809 TACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCGCC 602750 Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGA 76818 |||||| | ||| | || ||| | || | || | | ||| || | || || || || Sbjct 602749 CTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGA 602690 Query 76819 TGTACCATTTGTTCCAGAAATATAACTTCCACATGC-ACGAATATTACTAATAGATAGGC 76877 ||||| ||||||| ||| ||| | | ||| || || || | || | Sbjct 602689 CTCCCCATTAGTTCCAGCGATA-AACGTATTCTTGCTTCGGATGCAGTGAACATTGAGAC 602631 Query 76878 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCT 76937 | || || || || |||| ||||| || ||||| |||| | |||||||| || |||| Sbjct 602630 CGATCCCACCCGCGCTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCT 602571 Query 76938 CTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTC 76997 | ||||| || || |||| |||| | ||||||||| ||||| ||| | | | || | Sbjct 602570 CGATACTGTCGTCTTTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCC 602511 Query 76998 CTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATG 77057 | |||||||| | || || || || ||| | ||||| |||||||| | ||||||||| | Sbjct 602510 CAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGG 602451 Query 77058 TTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATAT 77117 | |||||| | || || | ||| |||||| |||| | ||| ||||| ||||| | Sbjct 602450 TCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGT 602391 Query 77118 GCTGAGG 77124 |||||| Sbjct 602390 ACTGAGG 602384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712885145144640