Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq137 118 2e-21 seq9 104 5e-17 seq383 98.7 2e-15 >seq137 Length=909340 Score = 118 bits (130), Expect = 2e-21 Identities = 159/218 (73%), Gaps = 10/218 (5%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| || ||||| ||||| |||||||| || | || || | |||||| Sbjct 657364 AGCACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTGCGACCATCT 657423 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| || || ||||| || | ||||| |||| | || || ||||| | Sbjct 657424 TCCAACTGCTTT--CCTGCAAAGATCAGGCGTTGCTGATCCGGTGGAATGCCCTCCTTGT 657481 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAA 152067 ||||||| ||| || ||| |||||| ||| ||| ||| || || || || | Sbjct 657482 CTTGAATCTTTGCCTTCACATTCTCTATCGAGTC---ACTGGGCTCCACCTCCAGTGTGA 657538 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | |||||||| || |||||||||||||||| ||||||| Sbjct 657539 TTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 657576 Score = 109 bits (120), Expect = 1e-18 Identities = 157/218 (72%), Gaps = 10/218 (5%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||||||||| || || || |||||||||||||| || | || || | ||||| Sbjct 657819 GAGTACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATC 657878 Query 151952 TTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||| | ||||| || || ||||| || | |||||||||| | || || ||||| Sbjct 657879 TTCCAACTGCTTT--CCTGCAAAGATCAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTG 657936 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTA 152066 || ||||| || || ||| |||||| ||| ||| ||| || || || || Sbjct 657937 TCCTGAATCTTCGCCTTCACATTCTCTATCGAGTC---ACTGGGCTCCACCTCCAGTGTG 657993 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || | |||||||||||||| ||||| Sbjct 657994 ATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 658031 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || || || || || || |||||||| || | |||||| | ||||| Sbjct 667801 AGCACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAAAGTGCGACCATCC 667860 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || ||||| | | |||||| || | || || || ||||| || Sbjct 667861 TCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCC 667920 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| |||| | |||| | || ||||| || |||||||| Sbjct 667921 TGAATCTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGTC 667980 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||||||||| | ||||| Sbjct 667981 TTCCCAGTCAGCGTCTTCACGAATATTTGCAT 668012 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| || || || || || |||||||| |||| || || | |||||| Sbjct 675739 AGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCT 675680 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || ||||| | | || ||||| | | || || ||||| || Sbjct 675679 TCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCC 675620 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||| || ||| |||||| ||| | ||| || || || || ||||| Sbjct 675619 TGGATCTTTGCCTTCACATTCTCTATCGAGTCACTAGGCTCAACCTCGAGGGTGATAGTC 675560 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||||||||||| |||||| Sbjct 675559 TTCCCAGTCAGCGTCTTCACGAAGATCTGCAT 675528 >seq9 Length=3474131 Score = 104 bits (114), Expect = 5e-17 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || |||||||| || || ||||| ||||| || || ||||| | | ||| | | Sbjct 2738477 AGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAATCAGAGAGAGTCCGC 2738418 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || || | || |||||||||||||||| || || || | | ||||| || Sbjct 2738417 CCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCT 2738358 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGA 152063 || ||||| |||||| ||| || |||| | | || ||| ||| || ||||| Sbjct 2738357 TTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATC---ACTTGGCTCAACCTCAAGG 2738301 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || ||||||||||| || || | |||||| Sbjct 2738300 GTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 2738259 >seq383 Length=735259 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| || ||||| || || || |||||||| | ||| | | ||||| Sbjct 365922 AGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCC 365863 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || || ||||| | ||| ||||| | | || || ||||| ||| Sbjct 365862 TCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCT 365803 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| |||| | || || ||| || |||||||| |||||| Sbjct 365802 TGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTT 365743 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| ||||| || | |||||| Sbjct 365742 TTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 365711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153739092540617