Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq5 178 1e-39 >seq5 Length=4770536 Score = 178 bits (196), Expect = 1e-39 Identities = 395/590 (67%), Gaps = 6/590 (1%) Strand=Plus/Minus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 ||||||||||| || ||||||||||| | ||| |||| || ||| ||| || | Sbjct 3307389 CATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGG 3307330 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 || ||||| | || || || || | ||| || || | ||||||||| || |||||||| Sbjct 3307329 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAAT 3307270 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAA 23688 | || || | ||| || || ||||| ||||| | | | ||| || | || | | Sbjct 3307269 ACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTTTATTCGCA 3307210 Query 23689 ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTT 23748 ||||| | | ||||| |||||| |||||| | |||| ||| || || Sbjct 3307209 ATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTA 3307150 Query 23749 AAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATT 23808 || ||||| |||| ||| | | || |||||||| || | | ||||| Sbjct 3307149 AACAGAAAGTCGCGTTCTATCGGATCCTTGACGTAGGTATCAATCAGAAGAGAGTACATC 3307090 Query 23809 TCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAAT 23868 ||||||||||| ||||| | ||| | || | ||||||||||| | ||| || | | | Sbjct 3307089 TCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAATT 3307030 Query 23869 TGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCA 23928 || || || ||| |||| | || || |||||| ||||| || |||||||| || || Sbjct 3307029 TGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCCGCG 3306970 Query 23929 AAGAAAGCAAGAACATATTTTATAAAATGTCTTT---CATCAGTTGATAATTTTTTCCAA 23985 |||||||| | ||||| || || || | | ||||| || | | ||| ||| Sbjct 3306969 AAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCA-TTAAGA--CTTTCCCAG 3306913 Query 23986 TCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGC 24045 ||| | | ||| || | |||||||||||| ||||||||||| ||| || | || | Sbjct 3306912 TCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAACCGCTTTC 3306853 Query 24046 TTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCT 24095 || || | ||||||||||| | ||| || || | | |||||||| Sbjct 3306852 TTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCT 3306803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521451971697800