Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq137 127 1e-24 >seq137 Length=909340 Score = 127 bits (140), Expect = 1e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | | ||| || || || || ||||| || |||||||| Sbjct 667779 TTGCATACCACCACGCAGACGAAGCACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTA 667838 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | ||| | || |||| |||||| || ||||||||||||||||||||||| Sbjct 667839 GTCAGATAAAGTGCGACCATCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGATC 667898 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | ||| ||||| ||| ||||| ||||| | | || |||||| | Sbjct 667899 AGGCGGAATACCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATTGTGTCGCTAGG 667958 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||| |||| |||||| ||||| || || || ||||||||||| ||||||||| Sbjct 667959 TTCCACTTCCAGCGTAATAGTCTTCCCAGTCAGCGTCTTCACGAATATTTGCATG 668013 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | || ||||| ||||||||| |||||| || |||||||| || Sbjct 675530 CATACCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTC 675471 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | ||| | || |||| |||||| || ||||||||||| || ||||| |||| Sbjct 675470 GGACAACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCTGG 675411 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| |||||| |||| | |||| |||| | ||| | | Sbjct 675410 TGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCTATCGAGTCACTCGGCT 675352 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| |||||| ||||| || || || || ||||| || |||||||| Sbjct 675351 CCACCTCCAACGTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 675300 Score = 125 bits (138), Expect = 5e-24 Identities = 169/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | || ||||| ||||||||| |||||| || |||||||| || Sbjct 667326 CATACCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTC 667385 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | ||| | || |||| |||||| || ||||||||||| || ||||| || | Sbjct 667386 GGACAACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCCGG 667445 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| |||||| |||| | |||| |||| | ||| | | Sbjct 667446 TGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCTATCGAGTCACTCGGCT 667504 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| |||||| ||||| || || || || ||||| || ||||||||| Sbjct 667505 CCACCTCCAACGTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCATG 667557 Score = 116 bits (128), Expect = 3e-21 Identities = 171/238 (72%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || || | || | || ||||| ||||||||| |||||| || ||||| Sbjct 668004 TATTTGCATGCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTT 668063 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| |||| | ||| | || |||| |||||| || ||||||||||| || ||||| Sbjct 668064 GTAGTCGGACAACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAAGCGTTGCTG 668123 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGG 44279 || | || | || ||||| ||| |||||| |||| | |||| |||| | ||| Sbjct 668124 GTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCTATCGAGTCAC 668182 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||||| || || ||||| || |||||||| || || || || ||||| Sbjct 668183 TCGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 668240 Score = 116 bits (128), Expect = 3e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| | ||| || |||||||| ||||||||| ||||||||||| Sbjct 668466 CATGCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATC 668525 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || |||| ||||| || |||||||||||||||||||| |||| Sbjct 668526 AGAAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGG 668585 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| || |||||| || | | |||| | || | ||| || || Sbjct 668586 TGGAATGCCTTCCTTATCTTGGATCTTC-GCCTTTACGTTCTCAATCGAATCGCTGGGTT 668644 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | ||| || ||||| || || || ||||| || || || |||||| Sbjct 668645 CAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCATG 668697 Score = 116 bits (128), Expect = 3e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| | ||| || |||||||| ||||||||| ||||||||||| Sbjct 668694 CATGCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATC 668753 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || |||| ||||| || |||||||||||||||||||| |||| Sbjct 668754 AGAAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGG 668813 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| || |||||| || | | |||| | || | ||| || || Sbjct 668814 TGGAATGCCTTCCTTATCTTGGATCTTC-GCCTTTACGTTCTCAATCGAATCGCTGGGTT 668872 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | ||| || ||||| || || || ||||| || || || |||||| Sbjct 668873 CAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCATG 668925 Score = 114 bits (126), Expect = 9e-21 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | | || || ||||| ||| ||||||||||||||||| Sbjct 657798 TTGCATTCCACCTCGAAGACGGAGTACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTA 657857 Query 44164 ATC-GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 || | | || | ||| | || |||| |||||| || |||||||||| || ||||| | Sbjct 657858 GTCAGACAAGGT-GCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGGCGTTGCTGGT 657916 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGG 44282 | | || | || ||||| ||| |||||| ||||| | |||| | ||| || Sbjct 657917 CCGGTGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCTATCGAGTCACTGG 657976 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||| || || || || || || | |||||||||||||||||||| Sbjct 657977 GCTCCACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 658031 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| | ||| ||||| || || ||||||||| ||||| || || Sbjct 668922 CATGCCACCACGAAGTCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTC 668981 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || |||| ||||||||| |||||||| | || ||||| || | Sbjct 668982 AGACAGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAAGATTAGGCGTTGCTGGTCCGG 669041 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| || |||||| ||||| | | || |||||| || ||| Sbjct 669042 TGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCGATTGTGTCGCTGGGTTC 669101 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| |||||| ||||| || || || || ||||| || |||||||| Sbjct 669102 CACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 669152 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGT 44186 ||| |||||||| ||| ||||||||| |||||||| || | | || || || | || | Sbjct 657366 CACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTG-CGACCATCTT 657424 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||| |||||| || |||||||||| || |||||||| | || | || ||||| || Sbjct 657425 CCAACTGCTTTCCTGCAAAGATCAGGCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTT 657484 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| | |||| | ||| || |||||||||| || || || | Sbjct 657485 GAATCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTT 657544 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || |||||||||||||| ||||| Sbjct 657545 TGCCGGTTAGAGTCTTCACGAAGATCTGCAT 657575 Score = 113 bits (124), Expect = 3e-20 Identities = 168/237 (71%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || || | ||| | | ||||||||||||||| |||||| || ||||| Sbjct 667548 TATTTGCATGCCACCACGCAGACGAAGCACCAGGTGAAGCGTTGACTCCTTCTGAATGTT 667607 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| |||| || ||| | || |||| ||| || || |||||||||||||||||||| Sbjct 667608 GTAGTCGGAAAGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTG 667667 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGC 44280 |||| || | ||| || || || ||||| ||||| | | || | || Sbjct 667668 GTCTGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACT 667727 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| | || || ||||| || || || |||||||| ||||||||||| Sbjct 667728 AGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 667784 Score = 111 bits (122), Expect = 1e-19 Identities = 170/241 (71%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || || | || | || ||||| ||||||||| |||||| || ||||| Sbjct 675308 TATTTGCATACCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTT 675249 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| |||| || ||| | || |||| ||| || || |||||||||||||||||||| Sbjct 675248 GTAGTCGGAAAGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTG 675189 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGC 44280 |||| || | ||| || || || ||||| ||||| | | || | || Sbjct 675188 GTCTGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACT 675129 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 | || ||||| | || || ||||| || || || |||||||| ||||| |||||||| Sbjct 675128 AGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATCTGCATGAT 675069 Query 44341 G 44341 | Sbjct 675068 G 675068 Score = 107 bits (118), Expect = 1e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| | ||| || |||||||| |||||| || ||||||||||| Sbjct 668238 CATACCACCACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTCTGAATGTTGTAATC 668297 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| |||| |||||| || || || ||||||||||| ||||||| Sbjct 668298 AGAAAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGG 668357 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || |||||| || | | |||| | || | || || || Sbjct 668358 CGGAATGCCCTCCTTATCTTGGATCTTC-GCCTTTACGTTCTCAATCGAATCACTGGGTT 668416 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | ||| || ||||| || || || ||||| || ||||| |||||| Sbjct 668417 CAACTTCTAGCGTTATAGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCATG 668469 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| |||||||| || ||||| || |||||||| |||| | | ||| | || || Sbjct 675737 CACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCTTC 675678 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || ||||||||||| || || || |||| ||| | || ||||| ||| Sbjct 675677 CAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTG 675618 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | |||| | ||| | || ||||| | || || ||||| Sbjct 675617 GATCTTTGCCTTCACATTCTCTATCGAGTCACTAGGCTCAACCTCGAGGGTGATAGTCTT 675558 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || |||||||||||||| ||||| Sbjct 675557 CCCAGTCAGCGTCTTCACGAAGATCTGCAT 675528 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| |||||||| || ||||| || |||||||| |||| | | ||| | || || Sbjct 667119 CACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCTTC 667178 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || || |||||||| || || || |||| || | || ||||| || Sbjct 667179 CAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTG 667238 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| |||| | || | || | || ||||| | || || |||| Sbjct 667239 AATCTTTGCCTTCAC-GTTCTCAATCGAATCACTCGGCTCAACCTCGAGGGTGATAGTCT 667297 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || |||||||||||||| ||||| Sbjct 667298 TCCCAGTCAGCGTCTTCACGAAGATCTGCAT 667328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359966150934159