Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq9 161 2e-34 seq137 149 2e-30 seq383 102 2e-16 >seq9 Length=3474131 Score = 161 bits (178), Expect = 2e-34 Identities = 172/225 (76%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 177916 AAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA 177975 |||| | |||||||| || || |||||||| |||||||| || ||||| ||||| || Sbjct 2738255 AAATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGA-- 2738312 Query 177976 GCTCAGACA--CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 || || | |||| |||||||| ||| ||| || || |||||||| ||||| || || Sbjct 2738313 GCCAAGTGATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACC 2738372 Query 178034 GGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGA 178093 || || ||||| |||||||||||||| || ||| | || || || ||||||| | || Sbjct 2738373 AGATCAACAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCTGA 2738432 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||||| | ||||| || || ||||| ||||||||| | ||||| Sbjct 2738433 TTATAATATTCAAAAGGAGTCGACACTCCATCTTGTTCTAAGACT 2738477 >seq137 Length=909340 Score = 149 bits (164), Expect = 2e-30 Identities = 161/209 (77%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| |||||||| ||| | || || ||||| ||||| || |||||||| || ||| Sbjct 658028 CAAATCTTCGTGAAGACTTTGACTGGCAAAACAATCACACTGGAGGTGGA--GCCCAGTG 657971 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || || |||||||||||||| || || || || |||||||||| Sbjct 657970 ACTCGATAGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCACCGGACCAGC 657911 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 |||| || ||||| || ||||| ||| | |||||||| | || |||| | || || ||| Sbjct 657910 AACGCCTGATCTTTGCAGGAAAGCAGTTGGAAGATGGTCGCAC-CTTGTCTGACTACAAC 657852 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| ||||| || || |||||||| Sbjct 657851 ATCCAAAAGGAATCCACCCTTCATCTTGT 657823 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||||||||| || || || || || || || ||||||||| | ||| Sbjct 669149 CAAATTTTTGTGAAAACTCTAACCGGCAAGACAATTACGCTGGAGGTGGAACCCAGCGAC 669090 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || |||||||| ||||| || || || || |||||||||||| Sbjct 669089 ACAATCGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAGCAA 669030 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||| | |||||||| | || || | || |||||| | Sbjct 669029 CGCCTAATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTATAACATT 668970 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || ||||| || || ||||| Sbjct 668969 CAAAAGGAGTCAACCCTCCACCTTGT 668944 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||| || ||||| || || || || || || |||||||||||||| | ||| | | Sbjct 667781 CAAATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTG--AGCCTAGTG 667724 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | | || ||||| || || |||||||| |||||||| || ||||| || ||||||| Sbjct 667723 ATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAGC 667664 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| || || |||||| | |||||||| | |||||| |||| || ||| Sbjct 667663 AGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAACA 667604 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || || ||||| || || || || Sbjct 667603 TTCAGAAGGAGTCAACGCTTCACCTGGT 667576 Score = 118 bits (130), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || || || || || |||||||||||||| | ||| | | Sbjct 667325 CAGATCTTCGTGAAGACGCTGACTGGGAAGACTATCACCCTCGAGGTTG--AGCCGAGTG 667268 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | | || |||||||| || ||||||||| ||||| || || || || || ||||| | Sbjct 667267 ATTCGATTGAGAACGTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCCCCAGACCAAC 667208 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||| | |||||||| || || ||| | |||||||| | || | |||| || ||| Sbjct 667207 AACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAACA 667148 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||||| || || || ||||| Sbjct 667147 TTCAGAAGGAATCGACCCTTCACCTTGT 667120 Score = 118 bits (130), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || || || || || |||||||||||||| | ||| | | Sbjct 675531 CAGATCTTCGTGAAGACGCTGACTGGGAAGACTATCACCCTCGAGGTTG--AGCCTAGTG 675588 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || || |||||| |||||||| || || || ||||| ||||| | Sbjct 675589 ACTCGATAGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAAC 675648 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||| | ||||| || || || ||| | |||||||| | || | |||| || ||| Sbjct 675649 AACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAACA 675708 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||||| || || || ||||| Sbjct 675709 TTCAGAAGGAATCGACCCTTCACCTTGT 675736 Score = 116 bits (128), Expect = 9e-21 Identities = 152/207 (73%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || |||||||||||||| | ||| | | Sbjct 675075 CAGATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTG--AGCCTAGTG 675132 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | | || ||||| || || |||||||| |||||||| || ||||| || ||||||| Sbjct 675133 ATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAGC 675192 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| || || |||||| | |||||||| | |||||| |||| || ||| Sbjct 675193 AGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAACA 675252 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || || || ||||| || || |||| Sbjct 675253 TTCAGAAGGAGTCAACGCTTCA-CTTG 675278 Score = 107 bits (118), Expect = 5e-18 Identities = 150/207 (72%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || |||||||| || || || || || || || | |||||||| || || Sbjct 667553 CAAATATTTGTGAAAACGCTGACTGGGAAGACAATTACGTTGGAGGTGGA--GCCGAGTG 667496 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || |||||||| || ||||| |||||||| || || ||||| |||||||||| Sbjct 667495 ACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAGC 667436 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | ||||| || ||||| ||| | || ||||| | || | |||| || ||| Sbjct 667435 AACGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAACA 667376 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || || || ||||| || || |||| Sbjct 667375 TTCAGAAGGAGTCAACGCTTCA-CTTG 667350 Score = 107 bits (118), Expect = 5e-18 Identities = 150/207 (72%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| ||||| || || || |||||| | |||||||| || || Sbjct 668237 CAGATATTTGTTAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGA--GCCGAGTG 668180 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || |||||||| || ||||| |||||||| || || ||||| |||||||||| Sbjct 668179 ACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAGC 668120 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | ||||| || ||||| ||| | || ||||| | || | |||| || ||| Sbjct 668119 AACGCTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAACA 668060 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || || || || || || || |||| Sbjct 668059 TTCAGAAGGAGTCGACGCTTCA-CTTG 668034 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/207 (71%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || |||||||| || || || || || || || | |||||||| || || Sbjct 675303 CAAATATTTGTGAAAACGCTGACTGGGAAGACAATTACGTTGGAGGTGGA--GCCGAGTG 675360 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || |||||||| || ||||| |||||||| || || ||||| || ||||||| Sbjct 675361 ACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCAGACCAGC 675420 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | ||||| || ||||| ||| | || ||||| | || | |||| || ||| Sbjct 675421 AACGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAACA 675480 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || || || || || || || |||| Sbjct 675481 TTCAGAAGGAGTCGACGCTTCA-CTTG 675506 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 ||||| |||||||| || || || || || || || || || || |||||| ||| Sbjct 668009 CAAATATTCGTGAAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAGC--- 667953 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| || ||||| || || ||||||||||| || || || || || || || ||| Sbjct 667952 GACACAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCGCCTGATCAG 667893 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || | ||||| || || || ||| | || ||||| | ||| | | || || ||| Sbjct 667892 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACTTTATCTGACTACAAC 667833 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||||| || || ||||| || Sbjct 667832 ATTCAGAAGGAATCGACCCTCCATCTCGT 667804 >seq383 Length=735259 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||||||||| || || ||||| ||||| || ||||| || ||| || Sbjct 365714 CAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAGCCCTCCGAT 365773 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| || || |||||||| ||||| || || || || || ||||| || Sbjct 365774 TCTATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAGGGGATTCCACCAGACCAACAG 365833 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || || || || | || |||||| | | | | ||||| || | Sbjct 365834 CGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAATATT 365893 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || ||||| || || ||||| Sbjct 365894 CAGAAGGAGTCAACCCTTCACCTTGT 365919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203645958151238