Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq10 165 8e-36 seq40 95.1 1e-14 >seq10 Length=2030774 Score = 165 bits (182), Expect = 8e-36 Identities = 510/783 (65%), Gaps = 12/783 (2%) Strand=Plus/Plus Query 16774 GTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTC 16833 ||| ||||| || | | || || || || || || |||||| || |||||||| Sbjct 442970 GTATCCCAGCTCCGTAAGTAGTCGGTCGGCAACGAACCTTATATACTGACACATTAAGCG 443029 Query 16834 GCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGC--TCTATA 16891 || ||||| || |||||| || || || || || || | |||| | || || ||| Sbjct 443030 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAAT--TCGCATTCAATA 443087 Query 16892 ACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGT 16951 ||||| ||| | || || | ||| | |||| | | || | | || |||| Sbjct 443088 CTGACCGCCTCCCTCATGATGTCATAAACCCTTTCCGCCGTAGGCTTGTTGACAATATGT 443147 Query 16952 TTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTA 17011 ||||| || || ||||| ||||| || | || || |||| ||||| || |||||| Sbjct 443148 TTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTA 443207 Query 17012 GAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGAC 17071 ||| || | || ||||| || || ||||| | ||| || || | || || || Sbjct 443208 CTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAA 443267 Query 17072 CCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG 17131 ||||||||||||| ||||| | | || ||||| | | || || ||||||| || Sbjct 443268 CCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCC 443327 Query 17132 TCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTT 17191 | ||| || |||||| | | |||| ||||| || | | || || |||| Sbjct 443328 TTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTT 443387 Query 17192 TCTATGGCCTTAA--ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGA 17249 | ||||| |||| | || || | || | | | | || ||| || ||||| || | Sbjct 443388 TGAATGGCGTTAAACAGAAAGTCGCGTTCTACCG--GATCCTTTACGTAGGTATCAATCA 443445 Query 17250 GTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATC 17309 | || ||||||||| || || ||||| || | ||| | || | ||| ||||| || | Sbjct 443446 GAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAAC 443505 Query 17310 GGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC--CGCTAGATTTTCGTTCACGAT 17367 | || || | ||||| || || || || ||| | ||||||||| || ||||| Sbjct 443506 GAGCCTCGGGAATTTGGACCTC--GTTACAAAAATTCAAAGTTAGATTTTCATTAACGAT 443563 Query 17368 GCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGT 17427 ||| || || || ||||| || ||||| | || | |||||| | ||| | | Sbjct 443564 GCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATT 443623 Query 17428 AAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACT 17487 |||| |||||| | | ||| || | || ||| ||||| || ||||| ||| Sbjct 443624 AAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGA 443683 Query 17488 AGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATA 17547 || || || || || || | | ||||||||||| |||||| ||||| | ||||| | Sbjct 443684 GGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAA 443743 Query 17548 TCT 17550 ||| Sbjct 443744 TCT 443746 >seq40 Length=886339 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 119950 CCATTCCAGTAtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACG 120009 |||||| || |||||||||||||||||||| ||||| ||||||||||||| || || || Sbjct 229290 CCATTCGAGGATTTTTTTAGCCCAGTACATCCGTAAAAATCCATGCATTTTGCCCTCTCG 229231 Query 120010 AACCATTTGAAGTTGTGCGGCGTTCCA 120036 || || ||| |||| || |||||||| Sbjct 229230 AAGCAGTTGGCGTTGAGCCGCGTTCCA 229204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517522142245680