Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq10 217 2e-51 >seq10 Length=2030774 Score = 217 bits (240), Expect = 2e-51 Identities = 529/794 (67%), Gaps = 22/794 (3%) Strand=Plus/Plus Query 16006 CTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACAT 16065 |||| ||| ||||| ||||||| || || || || || || |||||| |||||||| Sbjct 442964 CTTATCGTATCCCAGCTCCGTAAGTAGTCGGTCGGCAACGAACCTTATATACTGACACAT 443023 Query 16066 TAAGTCGCAATTAATTCCTATAAG-TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTT 16124 |||| ||||| || || ||||| ||| || || || || | ||| | ||||| || Sbjct 443024 TAAGCGACAATTCATGCCAATAAGATCG-ACAGGCAGGGCGTCTGTAAGAAATTCGCATT 443082 Query 16125 CTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTA 16184 | || ||||| || | ||||| || | | |||| | || | | ||| | Sbjct 443083 CAATACTGACCGCCTCCCTCATGATGTCATAAACCC---TTTCCGCCGTAGGCTTGTTGA 443139 Query 16185 GG---TGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAA 16241 |||||||| || || || || || || || || ||||| |||| ||||| | Sbjct 443140 CAATATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCA 443199 Query 16242 GTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAG 16301 | ||||| ||| || | || ||||| || || ||||| | |||||| || | || Sbjct 443200 GCTCGTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAG 443259 Query 16302 CAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGT 16361 ||||||| || |||||||||| ||||||| || || || || | | || ||||||| Sbjct 443260 CAAATGAACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGT 443319 Query 16362 ACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAAT 16421 ||| || | |||||| |||||| | | |||| ||||| || | | ||| Sbjct 443320 ACGGTGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACG 443379 Query 16422 CCATCGTTTCTATGGCCTTAAACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGT 16479 || ||||| ||||| ||||||| | || | || | | | || | ||| || || Sbjct 443380 GCAACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTACCGGAT--CCTTTACGTAGGT 443437 Query 16480 ATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATA 16539 ||||||||| | | ||||||||| || || ||||| |||| ||| | || | |||||| Sbjct 443438 ATCAATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATA 443497 Query 16540 GAAGCATCGAGCCTCCGCTATTTGTACTTC--CACGTAAAATC---GTTCCGCCAGGTTC 16594 || || |||||||| | ||||| || || || ||| || ||| || || Sbjct 443498 AAAACAACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTT-----AGATTT 443552 Query 16595 TCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTT 16654 ||||| ||||| || ||||| || || || || ||||| | | | |||||| | Sbjct 443553 TCATTAACGATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGC 443612 Query 16655 TCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGC 16714 ||| || ||||| | | ||| || | | ||| || | || ||| ||||| || Sbjct 443613 TCGCCATCATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACT 443672 Query 16715 GTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGA 16774 ||||| || || || || || || || | | ||||||||||| |||||| ||||| Sbjct 443673 GTCCAGAAAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGC 443732 Query 16775 AATACGACGTATCT 16788 | || ||| |||| Sbjct 443733 ATCACAACGAATCT 443746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511391220142320