Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10 266 4e-66 seq25 206 3e-48 >seq10 Length=2030774 Score = 266 bits (294), Expect = 4e-66 Identities = 519/756 (69%), Gaps = 23/756 (3%) Strand=Plus/Plus Query 24005 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 24064 ||||||||| || ||||| | || || || || | ||||||||||| ||||||| Sbjct 443030 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 443089 Query 24065 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGG--TGGATACAATAAAT 24120 |||||| || | || || || || | |||| | | || || |||||| | Sbjct 443090 GACCGCCTCCCTCATGATG--TCATAAACCCTTTCCGCCGTAGGCTTGTTGACAATA--T 443145 Query 24121 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 24180 ||||||| || | ||||| ||||| ||| || || || |||| ||| || | |||| Sbjct 443146 GTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGT 443205 Query 24181 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 24240 | ||| ||||| || ||||| || |||||||| || ||||| || ||||| ||||||| Sbjct 443206 TACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATG 443265 Query 24241 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG 24300 | ||||||||||| | || || | || || || || | || | || | || ||| Sbjct 443266 AACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTA--CGG 443323 Query 24301 CGC--TGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 24355 || | | || | |||||| | ||||||||||||||||||| ||||| |||| Sbjct 443324 TGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAA 443383 Query 24356 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCA 24413 || | || || ||||| ||| ||| ||| ||| ||| || || || |||||| Sbjct 443384 CGTTTGAATGGCGTTAAACAGAAAGTCGCGTTC--TACCGGATCCTTTACGTAGGTATCA 443441 Query 24414 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473 |||| |||| |||||||| |||||||||||||| | ||| | ||| | ||| || ||| Sbjct 443442 ATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAA 443501 Query 24474 CATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC--TGCTAAATTTTCATTCA 24531 || | |||||||| ||| || || || ||||||| ||| | || ||||||||| | Sbjct 443502 CAACGAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAA 443559 Query 24532 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 24591 | || || |||||||| || || || ||||| |||| || || | ||| | Sbjct 443560 CGATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCAT 443619 Query 24592 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 24651 | || | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| | Sbjct 443620 CATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGA 443679 Query 24652 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 24711 | || || | || || || || | | ||| || ||||| ||||| || || | | || Sbjct 443680 AAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAA 443739 Query 24712 CAAATCTATTTGGATTTTTTGCAAGGATTGGTTCCA 24747 | ||||| ||||| |||| || ||||||| Sbjct 443740 CGAATCTTCGGGGATTAGGAACAAGTATAGGTTCCA 443775 >seq25 Length=1211561 Score = 206 bits (228), Expect = 3e-48 Identities = 370/536 (69%), Gaps = 6/536 (1%) Strand=Plus/Minus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 ||||| ||||| || ||||| ||||||||||| || | || ||||| | | | | Sbjct 250419 ACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATC 250360 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 || || || || ||||| | || | ||| || | ||| | |||||| ||| Sbjct 250359 TCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGT 250300 Query 54149 TCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 54208 || | || |||| | | || || |||||||| ||||||||||| | || | |||| Sbjct 250299 TCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCG 250240 Query 54209 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 54268 ||| | || | || | | ||| || | || ||||||||| | ||||| || || | Sbjct 250239 GTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCAGCA 250180 Query 54269 ATATAGCTTCCACTGGCA-CGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATT 54325 ||| | | | || || || || | | ||||| |||| ||||| || || || Sbjct 250179 ATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--GACCGATCCCACCCGCGTTT 250123 Query 54326 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 54385 || ||||| | ||| ||| |||| | ||| ||||| || ||||| ||||| || ||| || Sbjct 250122 TTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCCTTC 250063 Query 54386 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 54445 || |||| | ||||||||||||||| || | | || || |||||||| | || Sbjct 250062 ATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTG 250003 Query 54446 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCT 54505 || || ||||| | ||||| |||||||| | ||||||||| ||||| ||||| | ||| Sbjct 250002 GGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGTCC 249943 Query 54506 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 54561 | ||| |||||| |||| || ||| ||||| ||||||| |||||| || || Sbjct 249942 ACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTC 249887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593694689568480