Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq32 122 7e-23 seq17 104 2e-17 >seq32 Length=1043406 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||| | || | || ||||||||||||||||||||||| | | Sbjct 737876 CCACCACGAAGTCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGAC 737817 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||| ||| || |||||| | || || | ||||||||| || Sbjct 737816 AGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGA 737757 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| ||||| | | | || || | ||| ||| Sbjct 737756 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACC 737697 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| ||||||||||||| ||||| ||||| |||||||| Sbjct 737696 TCCAGCGTAATTGTCTTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 737650 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || ||||| || |||||||| ||||| | || || | | ||| Sbjct 738773 AGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGATAGAGTACGACCATCC 738714 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| ||| || || || | || | || |||||||| || | ||| |||||||| Sbjct 738713 TCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCC 738654 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | | |||| ||||||| |||| ||| |||||| Sbjct 738653 TGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTGGGCTCCACCTCCAAGGTGATGGTC 738594 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | ||||| |||||||| ||||| Sbjct 738593 TTGCCGGTGAGGGTTTTAACAAATATCTGCAT 738562 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| ||||| ||||| | ||||| || | || |||| ||| ||||| Sbjct 749210 GTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCCAACTGCTTGCCA 749151 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || | || |||||||| || | ||| |||||||| ||||||| ||| Sbjct 749150 GCGAAGATCAATCGTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTC 749091 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | |||| ||||||| |||| || || || |||||||||| || Sbjct 749090 ACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTTAGAGTC 749031 Query 21159 TTGACAAATATTTGCATT 21176 || || || || |||||| Sbjct 749030 TTCACGAAGATCTGCATT 749013 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||| | || | || ||||||||||||||||| ||||| | Sbjct 731325 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 731384 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||| ||||||||| ||| | || | | |||||| ||| || Sbjct 731385 AGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 731444 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| ||||| ||||| | | | | ||||| ||||| Sbjct 731445 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 731504 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| ||||| | ||| || ||||| |||||||| Sbjct 731505 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 731551 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | || ||||||||||||||||| ||||| | || || || | || Sbjct 738317 AGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCT 738258 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| || || || ||| | || | | ||||||||| || | ||||||||| || Sbjct 738257 TCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCT 738198 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | | ||||| ||| || ||| | || |||||| Sbjct 738197 TGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTC 738138 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||||| || |||||||| || ||||| Sbjct 738137 TTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738106 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | || ||||||||||||||||| ||||| | || || || | || Sbjct 738089 AGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCT 738030 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| || || || ||| | || | | ||||||||| || | ||| ||||| || Sbjct 738029 TCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCCTCCTTATCT 737970 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | | ||| | ||| || ||| | || |||||| Sbjct 737969 TGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTC 737910 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||||| || |||||||| || ||||| Sbjct 737909 TTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 737878 >seq17 Length=1461088 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 23809 ACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGG 23868 ||||| || ||||| || || |||||||| || || || || || ||||| | | || | Sbjct 1120856 ACGTTACCGAGGTCCCCAACATGTCGCTCAGCAGCATCAGGAGCACCGTGGTTTTTGCCG 1120915 Query 23869 GTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGC 23928 ||| |||||||| ||||||| || |||||||| | | ||||| ||||||||||| Sbjct 1120916 TGGGGATTAAAGTGGGCGCCAGCCGAAGTGCAGCCTTGTGTTGTGTCACCGAATTCGTGG 1120975 Query 23929 ACGTGAAAACCGTGC 23943 |||||||| |||||| Sbjct 1120976 ACGTGAAAGCCGTGC 1120990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422240539574216