Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq12 136 6e-27 seq3 98.7 2e-15 seq32 91.5 2e-13 >seq12 Length=1725783 Score = 136 bits (150), Expect = 6e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || ||||| ||||| | ||| |||| ||| Sbjct 1076822 AATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAG 1076881 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||| | ||| || ||||| ||||| ||||| ||||| || |||||||| ||||| Sbjct 1076882 TGATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCA 1076941 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| ||||||| || || || || || || ||||| | || || | || ||||| Sbjct 1076942 ACAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGACTATAA 1077001 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 ||||||||| || || || | ||| | ||| || | ||||||| || || ||| Sbjct 1077002 TATTCAAAAGGAGTCGACACTCCATCTTGTTCTAAGACTACGAGGAGGCATGAAA 1077056 >seq3 Length=2943993 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || ||||||||||| ||| | ||| | || | Sbjct 307781 ATGCAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAGCCCTCC 307722 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| | ||| ||| | || || |||||||| || || || || ||||| || ||| Sbjct 307721 GATTCTATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAGGGGATTCCACCAGACCAA 307662 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||||||||| || || ||||| |||||| | || | ||| ||||| ||| Sbjct 307661 CAGCGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAAT 307602 Query 124719 ATTCAAAAAGAATCAAC 124735 ||||| || || ||||| Sbjct 307601 ATTCAGAAGGAGTCAAC 307585 >seq32 Length=1043406 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||||||||| | ||||| || || || || ||||| || | || | ||| | | Sbjct 738790 ATGCAAATATTCGTGAAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAGC 738849 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | || || ||||| ||||| || ||||| || |||||||| Sbjct 738850 GACACAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCGCCTGATCAG 738909 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || || || || || || || |||||| |||| || || ||| || || Sbjct 738910 CAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCAGACTACAAC 738969 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || | || | || | ||| | || |||||||| Sbjct 738970 ATTCAGAAGGAATCGACCCTTCACCTTGTGCTTCGTCTGCGTGGTGGTAT 739019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755421758956800