Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq32 113 4e-20 seq3 100 2e-16 seq17 91.5 1e-13 >seq32 Length=1043406 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || || | || ||||||||| | || |||||||| ||||||||||| || Sbjct 738788 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGAT 738729 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| | ||| ||||| ||| |||| | || ||||| || || || Sbjct 738728 AGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 738669 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || | || | | ||| || ||| ||| Sbjct 738668 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTGGGCTCCACC 738609 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | || |||||||| || ||||| ||||| |||||||| Sbjct 738608 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 738562 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| ||||||||||| || || || ||||| ||| || Sbjct 737859 CACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTC 737800 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || || |||| ||||| ||||| || || || ||||||||||||||| Sbjct 737799 CAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTG 737740 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | ||||| || || ||||| | || | || || Sbjct 737739 AATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTT 737680 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| |||||||| |||||||| ||||| Sbjct 737679 GCCGGTTAGAGTTTTCACAAAAATTTGCAT 737650 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| |||||||||||||| ||| | ||| || ||||| Sbjct 739227 CACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTC 739168 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| ||||| |||| | |||||||||||| || || || ||||| |||||| Sbjct 739167 CAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTG 739108 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | | || | ||| ||||||| ||| | || || Sbjct 739107 AATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTT 739048 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| ||||| || |||||||| Sbjct 739047 CCCGGTAAGAGTCTTTACGAAGATCTGCAT 739018 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| |||||||||||||| ||| | ||| || ||||| Sbjct 731342 CACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTC 731401 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| ||||| |||| | |||||||||||| || || || ||||| |||||| Sbjct 731402 CAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTG 731461 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | | || | ||| ||||||| ||| | || || Sbjct 731462 AATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTT 731521 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || ||||| || |||||| Sbjct 731522 CCCGGTAAGCGTCTTCACAAAGATTTGCATG 731552 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| ||||| |||||||| || | ||||| ||| || Sbjct 749223 CACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTC 749164 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || |||||| |||| | || ||||| || ||||| |||||||||||||| Sbjct 749163 CAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTG 749104 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | || | | ||| || ||| ||||| | || | ||||| Sbjct 749103 GATCTTTGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTT 749044 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||||| || || || |||||||| Sbjct 749043 GCCGGTTAGAGTCTTCACGAAGATCTGCAT 749014 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| || |||||||| ||| || ||||| |||||| Sbjct 731114 CACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAACGTGCGACCATCCTC 731173 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| ||||| || |||| | || ||||| || || || |||||||||||||| Sbjct 731174 CAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 731233 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | | ||| | ||| ||||| | || | || || Sbjct 731234 GATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAACGTAATTGTCTT 731293 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| || || ||||| ||||||||| Sbjct 731294 CCCAGTCAGCGTCTTCACAAATATCTGCATG 731324 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| || |||||||| ||| || ||||| |||||| Sbjct 739455 CACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAACGTGCGACCATCCTC 739396 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| ||||| || |||| | || ||||| || || || |||||||||||||| Sbjct 739395 CAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 739336 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | | ||| | ||| ||||| | || | || || Sbjct 739335 GATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAACGTAATTGTCTT 739276 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| || || ||||| ||||||||| Sbjct 739275 CCCAGTCAGCGTCTTCACAAATATCTGCATG 739245 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || ||||| |||||||| || || ||||| ||| || | ||| ||||| Sbjct 748754 GTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGCTTTCCC 748695 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || || |||||||| || || |||||||||||||| ||| ||| || Sbjct 748694 GCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTC 748635 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | | ||| || ||| ||||| | || | |||||||| |||| ||| Sbjct 748634 ACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTC 748575 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 748574 TTCACGAAGATTTGCAT 748558 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || || || || ||||||||||| ||| || ||||| ||| || Sbjct 739683 CACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCTTC 739624 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || |||||| |||| | || || || || || || |||||||| |||||| Sbjct 739623 CAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGGATGCCCTCTTTGTCTTG 739564 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | | || | ||| ||||||| ||| | || || Sbjct 739563 AATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTT 739504 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| ||||| || |||||||| Sbjct 739503 CCCGGTAAGAGTCTTTACGAAGATCTGCAT 739474 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || || || || || |||||||| ||| || ||||| ||| || Sbjct 730886 CACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAATGTGCGACCATCTTC 730945 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || |||||| |||| | || || || || || || |||||||||||||| Sbjct 730946 CAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGGATGCCCTCCTTGTCCTG 731005 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | || | | || | ||| ||||||| ||| | || || Sbjct 731006 GATCTTTGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTT 731065 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| ||||| || |||||||| Sbjct 731066 CCCGGTAAGAGTCTTTACGAAGATCTGCAT 731095 >seq3 Length=2943993 Score = 100 bits (110), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCC 118586 ||| | ||| | || ||||| || ||||| |||||||| ||| | ||| |||| Sbjct 307572 CACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAG--ATAAGGAACGTCCATCC 307629 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | || || ||||| | || |||||||| || || || || || |||||||||||| Sbjct 307630 TCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCT 307689 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||| || || || | || | | || | | ||||||||| | || | ||| Sbjct 307690 TGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTT 307749 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| |||||||| ||||||||||||||| Sbjct 307750 TTGCCGGTAAGAGTTTTCACAAAAATCTGCATG 307782 >seq17 Length=1461088 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 47175 AATGTTACCCAGATCGCCTACGTGACGCTCGGCGGCGTTGGGAGCGCCGTGATTGCGGCC 47234 || |||||| || || || || || ||||| || || | ||||| ||||| || ||| Sbjct 1120855 AACGTTACCGAGGTCCCCAACATGTCGCTCAGCAGCATCAGGAGCACCGTGGTTTTTGCC 1120914 Query 47235 CAACGGATTATAGTGTTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAATTCGTG 47294 |||||| |||| |||| ||||| |||||||| | | ||||| ||||||||||| Sbjct 1120915 GTGGGGATTAAAGTGGGCGCCAGCCGAAGTGCAGCCTTGTGTTGTGTCACCGAATTCGTG 1120974 Query 47295 CACGTGAAATCCGTG 47309 |||||||| ||||| Sbjct 1120975 GACGTGAAAGCCGTG 1120989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433811228221192