Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq32 116 4e-21 seq12 102 9e-17 >seq32 Length=1043406 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| |||||||||| ||||| || |||| || | ||||||||||||||| Sbjct 738525 CTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAA 738466 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||| || || | ||| | || |||||| || ||| || || | | Sbjct 738465 AATCAAACGCTGTTGATCTGGCGGAATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTT 738406 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || || || | ||| || || | ||| ||||| ||||| ||||| ||||| || Sbjct 738405 CTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGAC 738346 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 738345 AAAGATCTGCAT 738334 Score = 104 bits (114), Expect = 3e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| || || |||| ||| || || | || || | |||||| || || || Sbjct 737841 CTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAA 737782 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || || |||||||| | || | || |||||||| | ||| | || | || | Sbjct 737781 GATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGT-CTTGAATCTTCGCCTTCACAT 737723 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | |||||||| | |||||| || | ||| || || ||||| ||||| || || | Sbjct 737722 TCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTTTTCA 737663 Query 43171 CAAAGATTTGCATTTTTACGC 43191 |||| |||||||| | |||| Sbjct 737662 CAAAAATTTGCATCGTGACGC 737642 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| ||||| || | ||||| || | || || | ||||||||||| || Sbjct 738069 CTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAA 738010 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||| | || | || |||||| || ||| || || | | Sbjct 738009 GATCAAACGCTGCTGGTCTGGTGGAATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTT 737950 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || ||||| | ||| || || | ||| ||||| ||||| ||||| ||||| || Sbjct 737949 CTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGAC 737890 Query 43172 AAAGATTTGCAT 43183 ||| || ||||| Sbjct 737889 AAAAATCTGCAT 737878 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| ||||| || | ||||| || | || || | ||||||||||| || Sbjct 738297 CTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAA 738238 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||| | || | || ||||| || ||| || || | | Sbjct 738237 GATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTT 738178 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || || || | ||| || || | ||| ||||| ||||| ||||| ||||| || Sbjct 738177 CTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGAC 738118 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 738117 AAAGATCTGCAT 738106 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || ||||| |||| || || || | || || | |||||| || || || Sbjct 748748 TCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGCTTTCCCGCAAAG 748689 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111 || || || ||||| || | || | || |||||||||| ||| | |||| || | | Sbjct 748688 ATCAGGCGTTGCTGATCTGGTGGAATGCCCTCCTTGTCC-TGAATCTTTGCCTTCACATT 748630 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || ||| || | ||||| || | ||||| |||||||| || | ||||| || Sbjct 748629 CTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCAC 748570 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 748569 GAAGATTTGCAT 748558 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| ||||| || | |||||||| |||| || | ||| || ||||| || Sbjct 731360 CTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAA 731419 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | |||||||| || | || | | ||| |||| | ||| | || | || | Sbjct 731420 GATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGT-CTTGAATCTTGGCCTTCACAT 731478 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | || || || | || || |||| ||||| || || || || |||||||| | Sbjct 731479 TCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCA 731538 Query 43171 CAAAGATTTGCAT 43183 ||||||||||||| Sbjct 731539 CAAAGATTTGCAT 731551 >seq12 Length=1725783 Score = 102 bits (112), Expect = 9e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||||||||| || || | ||||||||| |||| || | ||||||||| ||||| Sbjct 1077014 CTCCTTTTGAATATTATAGTCGGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAA 1076955 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || || || || || | || | | ||| ||||| ||||||| ||| | | Sbjct 1076954 GATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTT 1076895 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | | || || | || || || | || |||||||| || || || ||||| || Sbjct 1076894 CTCAATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAAC 1076835 Query 43172 AAAGATTTGCATTTTT 43187 ||| ||||||||| || Sbjct 1076834 AAAAATTTGCATTATT 1076819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571791682367280