Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq32 105 5e-18 >seq32 Length=1043406 Score = 105 bits (116), Expect = 5e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| |||||| ||||||||||||||| || ||| |||| |||| || Sbjct 731348 GTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCCAACTG 731407 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| || || || ||||| ||||| || || || || | |||||| ||||| ||| || Sbjct 731408 TTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTT 731467 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | || | | ||| ||||| | ||| || ||||| || || Sbjct 731468 GGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGT 731527 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 || ||||||||||||||||||||| || Sbjct 731528 AAGCGTCTTCACAAAGATTTGCATGATG 731555 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | ||| | | |||||||| ||||| ||| ||||||||||||||||| Sbjct 738789 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGA 738730 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || |||| || ||||| ||||| ||||| || || ||||| || || Sbjct 738729 TAGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGG 738670 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| || | | | ||| | |||||| Sbjct 738669 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTGGGCTCCAC 738610 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||| || |||||||| || || || || ||||| || ||||| Sbjct 738609 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 738562 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||||||||||||||| || ||| | || |||| || || || ||||| Sbjct 738980 TCCTTCTGAATGTTGTAGTCTGATAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAG 738921 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| ||||| || || || || | ||||||||| ||| ||| || ||| || | Sbjct 738920 ATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCCTGAATCTTGGCCTTCACATTC 738861 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| | | ||||| |||| ||||| ||||| || ||||| |||||||| Sbjct 738860 TCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGTCTTCCCAGTCAGCGTCTTCACG 738801 Query 45326 AAGATTTGCATG 45337 || ||||||||| Sbjct 738800 AATATTTGCATG 738789 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| || | |||| | || |||| || || || ||||| Sbjct 730905 TCCTTCTGGATGTTGTAGTCGGACAATGTGCGACCATCTTCCAACTGCTTGCCAGCGAAG 730964 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| || |||||||| || || | |||||||||||| || ||| ||| || | Sbjct 730965 ATCAATCGTTGTTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTC 731024 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | || | | ||| ||||| | ||| || ||||| || || |||||||| || Sbjct 731025 TCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACG 731084 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 731085 AAGATCTGCAT 731095 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||| || ||||||||||| || ||| | || |||| || Sbjct 749217 GTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCCAACTG 749158 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| ||||| || || ||||| ||||| | |||||||||||| || || Sbjct 749157 CTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTT 749098 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | | ||| | ||||||||||| || || || ||||| || Sbjct 749097 TGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGT 749038 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||||||||||| ||||| ||||| Sbjct 749037 TAGAGTCTTCACGAAGATCTGCAT 749014 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||||||||||||| || | |||| | || |||| || || || ||||| Sbjct 739664 TCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCTTCCAACTGCTTGCCAGCGAAG 739605 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| || |||||||| || || | ||||| ||||| ||| || ||| || | Sbjct 739604 ATCAATCGTTGTTGGTCTGGGGGGATGCCCTCTTTGTCTTGAATCTTGGCCTTCACATTC 739545 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | || | | ||| ||||| | ||| || ||||| || || |||||||| || Sbjct 739544 TCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACG 739485 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 739484 AAGATCTGCAT 739474 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| |||||| ||||||||||||||| || ||| |||| |||| || Sbjct 739221 GTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCCAACTG 739162 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| || || || ||||| ||||| || || || || | |||||| ||||| ||| || Sbjct 739161 TTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTT 739102 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | || | | ||| ||||| | ||| || ||||| || || Sbjct 739101 GGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGT 739042 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| || ||||| ||||| Sbjct 739041 AAGAGTCTTTACGAAGATCTGCAT 739018 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||| || ||||||||||| || |||| | || |||| || ||||| || || Sbjct 748748 TCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGCTTTCCCGCAAAG 748689 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || || || || || || | |||||||||||| ||| ||| ||| || | Sbjct 748688 ATCAGGCGTTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTC 748629 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||| | ||||||||||| || || || ||||| |||| ||||||||| Sbjct 748628 TCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACG 748569 Query 45326 AAGATTTGCAT 45336 ||||||||||| Sbjct 748568 AAGATTTGCAT 748558 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| |||||||| ||||| ||| |||| | || |||| || || || || || Sbjct 737841 CTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAA 737782 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || || ||||| || || | ||||||||||| ||| || ||| || Sbjct 737781 GATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATT 737722 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | |||||||||| ||||| |||||||| || ||||| ||||| Sbjct 737721 CTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTTTTCAC 737662 Query 45325 AAAGATTTGCAT 45336 ||| |||||||| Sbjct 737661 AAAAATTTGCAT 737650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395057740886146