Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq10 178 1e-39 >seq10 Length=2030774 Score = 178 bits (196), Expect = 1e-39 Identities = 508/770 (66%), Gaps = 16/770 (2%) Strand=Plus/Plus Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 14089 |||| || || |||| |||| ||||| ||| ||||||| ||||||||| || || Sbjct 442986 AGTAGTCGGTCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCATGCCAATA 443045 Query 14090 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149 || | ||||| | | || | |||||| ||| ||| || ||||| | || Sbjct 443046 AGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACTGACCGCCTCCCTCATG 443105 Query 14150 ATAATCGTAATAATTTCATTA-GAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACA 14205 || || |||| | || | | ||| | || | | ||||||||||| | || Sbjct 443106 AT----GTCATAAACCCTTTCCGCCGTAGGCTTGTTGACAATATGTTTAAAAATGAGGCA 443161 Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265 |||||||| || ||||| ||||||| ||| || || ||||| ||| || | || Sbjct 443162 TGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCC 443221 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATAT 14325 ||||| | || || || || | ||| || || | ||| ||||| || |||||||||| Sbjct 443222 AGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAATAC 443281 Query 14326 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14385 ||||||| ||||| ||||| | | || || | ||| ||| ||||| || | || Sbjct 443282 GCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTTTATTTGCAAT 443341 Query 14386 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 ||| | |||||| || | || || || | | || |||| ||| || ||||| Sbjct 443342 CCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAA 443401 Query 14446 TA-AATGT-TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACAT 14502 | || || | |||| | ||| | ||| |||||||| || ||| | ||||| Sbjct 443402 CAGAAAGTCGCGTTCTACCGGATCCTT--TACGTAGGTATCAATCAG-AAGAGAGTACAT 443458 Query 14503 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14562 |||||| || |||||||| | || | || | ||||||||||| | ||| || | Sbjct 443459 TTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAAT 443518 Query 14563 TTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 ||| ||||| | | ||||| | | | |||||||||||| || |||||||| || | Sbjct 443519 TTGGACCTCGTTACAAAAAT-TCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCCG 443577 Query 14622 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAAT 14681 | || || ||||| | | ||| |||| |||| ||| | || ||| ||| | Sbjct 443578 CGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGACTTTCCCAGT 443637 Query 14682 CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTT 14741 | | | |||||| | | ||| ||||| ||||||||||| ||| ||||| ||||| | Sbjct 443638 CAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAACCGCTTTCT 443697 Query 14742 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTT 14791 | || | |||| || || | ||| || || | || || |||||| Sbjct 443698 TGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCTT 443747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482323737685680