Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq32 96.9 3e-15 seq12 82.4 6e-11 >seq32 Length=1043406 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || ||||| ||||| ||||||||||| | || || || ||||||||| || Sbjct 748760 TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGC 748701 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || |||||| |||| || | ||| ||||| || | ||| ||||| || ||| | | Sbjct 748700 TTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTT 748641 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | | | ||||| |||||| || | ||||| ||||||| ||| Sbjct 748640 GCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCAGTC 748581 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 || || || || || |||||||| Sbjct 748580 AAAGTCTTCACGAAGATTTGCAT 748558 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| || || | ||| || ||||| || ||||||||||| ||||| | | Sbjct 737876 CCACCACGAAGTCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGAC 737817 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||| || || |||||| |||| || | ||| || ||| || Sbjct 737816 AGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGA 737757 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| ||||| || ||| | ||| || | ||| ||||| | ||| || Sbjct 737756 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACC 737697 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || || | |||||||| | ||||| |||||||||||||| Sbjct 737696 TCCAGCGTAATTGTCTTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 737650 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 18095 TTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTC 18154 ||| || || || || | ||| || | |||||| || ||||| || |||||||||||||| Sbjct 739704 TTAACCCCCACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTC 739645 Query 18155 GGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCAC 18214 || || ||| || ||||||||| || ||||| || |||| | || |||||| || Sbjct 739644 GGACAATGTGCGACCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGG 739585 Query 18215 GGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC 18274 ||| | ||| || || || ||| | ||| || | ||| | |||| ||||| Sbjct 739584 GGGGATGCCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTC 739525 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | || ||||| | || ||||| || || ||||| Sbjct 739524 AACCTCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 739474 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | |||||| || ||||| || || ||||||||||||| | Sbjct 730869 CCGCCACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAC 730928 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||||||||| || ||||| || |||| | || |||||| || ||| Sbjct 730929 AATGTGCGACCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGG 730988 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| ||||| || || | | ||| || | ||| | |||| ||||| Sbjct 730989 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACC 731048 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | || ||||| | || ||||| || || ||||| Sbjct 731049 TCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 731095 >seq12 Length=1725783 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| |||||||| || || | || ||||| || || |||||||| || ||||||| Sbjct 1077049 CCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAG 1076990 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | || ||||| || || || || ||||||| | ||||||||| || Sbjct 1076989 AGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGT 1076930 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || || || |||| |||||| || | ||| | |||| ||||| Sbjct 1076929 ATTCCCTCTTTGTCTTGGATTT-TTGCTTTTACGTTCTCAATGGAATCACTTGGCTCAAC 1076871 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||| ||| ||| |||| || || | || || ||||||||||||||| || Sbjct 1076870 CTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATTATT 1076819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379327236077370